Pseudomonas sp. S9, PSES9_RS0116225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. S9 Contig8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTGAACGCTCGATCATCGCCGCCGAACTCAATCGCTCGCACAGTTCGATGCGCAGCCTGGCCGAAGCCTTGGGCGTGCCCCGCAAGACCCTGCACGACA AATTGCGCAAACATGGCCTGAGTTTCGCTGACACTGGCGAAAGCTCGCCAGATAGCGCGGACTAACTGGCGAAAAACCGCCACCTCTAATAGCCAATCAA CTATTGCTATGCGAATCTCGCATAGCAATAAAATATCATCGTCAACCTCAACATAGATAAAAGCCAGCAACAACGGGAGCTATTGGAATTACCCACTGAA ATTGCTAACTGTTTTTCGCACAAGCAATACACTGGCATGGCCGTTGCTCTACCCTTTGCAGGCGATACAACAAATACAAGCCAGGTAATCTCTGCCATGC GCCCGTCATTTTCTGACAAGCAGCCTAGACTTGTTGTTGTTCGCCCGGTTTTCGCGCTACGGCGCTCAACGCTATAAACACAACAAGAGGAAGTATTCGC
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| DNA Sequence for Gene |
>PSES9_RS0116225
ATGTTCAAAATGACTGCCAAGGCACTCGCATGTGCCCTGTCGCTGAGCATCGCCGGTATGGCCCAGGCGGCCGACCCGATCGTGATCAAATTCTCCCACG TCGTAGCCGACAACACCCCTAAAGGCCAAGGCGCAAACCTGTTCAAGAAACTGGTTGAAGAACGCCTGCCAGGCAAAGTAAAGGTAGAGGTTTACCCGAA CTCGTCGCTGTTCGGTGACGGTAAAGAAATGGAAGCCCTGCTGCTCGGCGACGTGCAACTGATCGCTCCATCGCTGGCCAAGTTCGAGCAATACACCAAA AAACTGCAGATTTTCGACCTGCCGTTCCTGTTCAACGATATTCACGCCGTCGACAAATTCCAGCAAAGCCCACAAGGCCAGGAACTGCTGACTTCGATGG AATCGAAGAACATCACAGGCCTCGGCTACTGGCACAACGGCATGAAGCAGCTGTCGGCCAACAAGCCACTGCACGAACCTAAAGACGCTCGCGGCTTGAA GTTCCGTGTACAGGCTTCTGCAGTACTTGAAGAGCAATTCAAGGCAGTGCGCGCCAACCCACGCAAGATGAGCTTTGCCGAGGTTTACCAAGGCCTGCAA ACTGGCGTTGTAAACGGTGCGGAAAACCCGTACTCGAACATCTACAGCCAGAAGTTCAACGAAGTTCAGAAGTACATCACCGAATCCAACCACGGTGTAC TGGACTACATGCTGATCACCAACACCAAGTTCTGGAACGGCCTGCCTGAAGATGTACGCACCGAACTGGACAAGATCCTGGTTGAAGTGACCGCTGAAGT GAACAAGCAAGCCGAGATCCTCAACGAAGGTGACAAGCAGCGCATCATCGACGCTAAAACCAGCGAGATCATCACCCTGACGCCAGAGCAGCGTGCTGAG TGGCGCGATGCCATGAAGCCAGTCTGGAAGAAGTTTGAAGGCGACATCGGTGCTGACCTGATCAAGGCCGCTGAAGCTTCGAACAACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTGACCTGGCCGCAATTGCGGCTCGAAACCCGCTAGCGCGCGCCTCCAGGGCACGCGCTACCGGGCCCCAAGCAAGATCGCGGGTTACCACGGTCTTCG CCCCTCACCTTTGGAGATCTTATTGATGAACGCCTTGCGGCGCGTTTGGGACCACTTCGAAGAAGGCTT
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| Amino Acid Sequence |
>C4-dicarboxylate ABC transporter
MFKMTAKALACALSLSIAGMAQAADPIVIKFSHVVADNTPKGQGANLFKKLVEERLPGKVKVEVYPNSSLFGDGKEMEALLLGDVQLIAPSLAKFEQYTK KLQIFDLPFLFNDIHAVDKFQQSPQGQELLTSMESKNITGLGYWHNGMKQLSANKPLHEPKDARGLKFRVQASAVLEEQFKAVRANPRKMSFAEVYQGLQ TGVVNGAENPYSNIYSQKFNEVQKYITESNHGVLDYMLITNTKFWNGLPEDVRTELDKILVEVTAEVNKQAEILNEGDKQRIIDAKTSEIITLTPEQRAE WRDAMKPVWKKFEGDIGADLIKAAEASNN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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