Pseudomonas sp. S9, PSES9_RS0113570
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. S9 Contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGGGCTGGGAGCCGCCCGTCTCGGGGACAAAACCGCATGCGACAGCGCGATCAGCAGCGCCGTGATTCCGAACGTGCTGATCAACGGCAAACCCGCAG CGGTGCTCGGCTCAACGGCCAGCCATAACAACAACCCGATCGTAACAGGCTCCGGCACAGTGGTGATTGGCAGTTCGCATACAGCAGCGGAGTTTATTGC GCCTGCGCAAATGGCCACAAAGGAGGGCAATACCTCCAGCTAATACCTTGGCCAGACAAGCGCGATATTGATCGAAAGCAAAGTATCCCAGCGTAATTTT GGAGATAACGGTTGCGGTCACCGACGTTCAAGTAATCGCGATGTTGTTTTATCTGCGCCGCAACATCCGCTTCGTACAGGTTTTTGCAGGAAAAAGCGGT GCGCTCAAATTATTGGCAATTACCACCACTGGGAAAATCTCGCCCTGACGCGAGAGCCCTGAAGCGCCTTTCCATTAACTGCCCAATCAAGGATTGATCC
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| DNA Sequence for Gene |
>PSES9_RS0113570
GTGTCTTTTAACCACTACTACCAGAGCGAACTCACCGCCCTGCGCCAACTGGGCAAGCGATTTGCCGAGCGCAATCCGGCGTTGGCGCCGTTTCTTGGGC AGAGCGGTCGCGACCCGGATGTGGAGCGTTTGCTGGAAGGCTTCGCCTTTCTCACCGGGCGCTTGCGGCAAAAGCTTGATGATGAACTGCCAGAGCTGAC CCACTCGCTGATGCACTTGCTGTGGCCAAACTACATGCGCCCATTGCCGGGTTTCAGCATGCTCCAGTTCGAGCCCCTGACACGTCCAGGCGCCGCTCAA TCTGTACCGCGTAACACACCGGTTGAAGCAAAGCCGATTGAGGGTGTTACCTGTCAATTCCGCACAGCCTACGACACCGATGTGTTACCGCTGGCGATGA GCGCCCTGCAGTACTCGGTCAAAGGAATGGGCGCGGTGCTCAGCCTGAAAATGCAGATGAGCGCCGACGGCAATATCGCTGACCTGAACCTGACCAAGCT GCGTCTGCACCTGGCCGGCGAGCGCTACATCAGCCAGATGCTGTACCTCAGCCTGCTACATCACTTGGGCAGCATCCAGGTGGTGCTGCTCGACGACAAA GGCAAGCCCATCCTGCGCGACCCAAGAGAAGTCGCGGTGCCCAGCCTGACCCTGAGCGCCAATCAGGTCAAGCCGGTTGGTTTTGCCGAAGACCAGGCAC TGATCCCCTATCCGCTCAACACCTTCCGCGGCTACCGCTACCTGCAGGAATATTTCGCTTTCCAAGAGAAGTTCATGTTTGTTGATCTGTTTGGCCTGGA CGGCTTGAAGCAGGTTCCGCAGGAGGTCATGGAGCAAGCCCGGGGTATCGAGTTGCGTTTTGATATCAATAAGGCCGGTGAGCAGCGAATTCGTCCAACC CTGGATAACGTGCGGCTCTACTGCACCCCGGTGGTCAACCTGTTCGAGCATGACGCCACACCAATTCGCCTGGACGGCAAACAGGATCGCTACCTGCTGC TGCCTGCCGAACTAAGCACCAAACATTGCGGGGTGTTCTCGGTTGACCGGGTGACTGGCTGGAAACCCGGTGGCCAGGGTTATGAGGTCTATGTGCCCTT CGAATCTTTCGAACACGACGCAAGCTTCGATGTCGGCACCGCCCGTCCCCACTACAGCGTGCGCCAGGAAACATCCCTGCTCAGGGAAGGCACCGATACC TGGCTCAGTTTTGGCCTGCGCGATGAAGCCGAGCACGAGACACTATCGATCGAGTTGACCTGCACCAATCAGAGCCTGCCGAGCAAATTGGCCCTTGGTG ATATTTGCGTACCCAGCGAGAAAACCCCGGGTTTCCTGCACTTTCGCAACATCAGCGCCGTGACCCCAAGCTACGCACCGCCATTGAATCGCGACTTCCT GTGGAAGCTGATTTCCAACATGTCGCTCAACTATTTGTCACTGGCCAACGTTGAGGCGCTGAAAGTCATTCTCGAAACCTACGACTTGCCGCGCTACTAC GACCAACACGCCGAGAAAGTCAGCAAACGCTTGCTTGATGGCTTGAAAAGCATTCGCCACACCCATGTCGACCGCCTGGAACGCGGGCTGCCGATACGTG GCGTGCGCACCGAAATGACCATCGACCCAGATGGCTACATCGGCGAAGGCGATCTGTTTTTGTTCGCATCGGTACTTAATGAATTTTTTGCCCTTTACGC CAGTTTGAATTCCTACCACGAGCTTCGCGTAAACAGTACTCAGGGAGAGGTCTACACAGGGACGCCACGCATGGGGCTACAGCCCCTGCTATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGGCTTAGCCGGGGCATCCGCGAGTACAGCCTGTTCCAGGGTGTGCAGTTGGTGCTCAAACGATTGCAAGAAGCGCATCCCGAGCTGGATGAGGAGTC CTTGCACCTGCACCTTGAGTTGCAGGCTAACCCAAGCCTTGGTTTCCCTGGGAGCGACATCGAGCGCGTTGAATTCATCGAGGAAAACGGTGAGTTGCGA GCGCGCATGCGCATCAACCTGGTCAGCCTCATTGGCTCGGGTTCGCCGCTGCCCGCCTTTTATGGCGAACAAGCCCTGGGGGACGGTGAAGACGGCAATC CAACCCGTGATTTTCTTGACCTGTTCAATAACCGTCTACAGCGCTTGCTGCTGCCGGTTTGGCAAAAATACCGATACCACTCGCGCTTCAAGACCGGGGC GCTGGATCAATTTTCGCAACAGCTGTTTTCATTGATCGGCTTGCGTGGGGAAAAAATCCGCGCAACCTCGGAACTCAACTGGAAACGCCTGCTGCCGTAC
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| Amino Acid Sequence |
>type VI secretion protein
MSFNHYYQSELTALRQLGKRFAERNPALAPFLGQSGRDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPNYMRPLPGFSMLQFEPLTRPGAAQ SVPRNTPVEAKPIEGVTCQFRTAYDTDVLPLAMSALQYSVKGMGAVLSLKMQMSADGNIADLNLTKLRLHLAGERYISQMLYLSLLHHLGSIQVVLLDDK GKPILRDPREVAVPSLTLSANQVKPVGFAEDQALIPYPLNTFRGYRYLQEYFAFQEKFMFVDLFGLDGLKQVPQEVMEQARGIELRFDINKAGEQRIRPT LDNVRLYCTPVVNLFEHDATPIRLDGKQDRYLLLPAELSTKHCGVFSVDRVTGWKPGGQGYEVYVPFESFEHDASFDVGTARPHYSVRQETSLLREGTDT WLSFGLRDEAEHETLSIELTCTNQSLPSKLALGDICVPSEKTPGFLHFRNISAVTPSYAPPLNRDFLWKLISNMSLNYLSLANVEALKVILETYDLPRYY DQHAEKVSKRLLDGLKSIRHTHVDRLERGLPIRGVRTEMTIDPDGYIGEGDLFLFASVLNEFFALYASLNSYHELRVNSTQGEVYTGTPRMGLQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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