Pseudomonas sp. S9, PSES9_RS0113555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. S9 Contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACGGATTAACGTCACTTTTAAGCCCGCCACTGGCGATGCCCAGGAAGAAATCGAGCTGCCGCTGAAATTGATGGTGTTGGGCGATTTCACTCAGCGTCAG GACGACCGCAAGATCGAAGATCGTAAACCGATCAGCATCGACAAGAACACCTTCGACGAAGTGCTCGAGAAGCAGGAGTTGAGCCTGACCTTTGCAGTGC CTAACCGCCTGCAGGAAGACAGCGCCGACGAAGAGCTCGCCGTGAAGCTGAACATCAACTCGATGAAAGACTTCAACCCCGCCAACGTGGTTGAGCAAGT GCCAGAGCTGAAGAAGCTGATGGAACTGCGTGACGCCCTGGTCGCCCTCAAAGGTCCGCTGGGTAATGCCCCGGCCTTCCGCAAAGCCATCGAAAGCGTA TTGGCCGACGATGACTCTCGCGACCGCGTACTCGGTGAACTCGGACTCGCTGCCCAAGGCAAGCTTGAATCCTGATCGCAATTAACAAGGAAGCTATTAG
|
|
| DNA Sequence for Gene |
>PSES9_RS0113555
ATGAGCACTAGCGCAGCAAAAGACACCGGCGGCCAAGCTACCGAAGTCGGTCTTCTGGACCAAATCATCGCTGAAACCCGACTGACGCCAGACGACGAAG CCTATGACATCGCCAAGCGTGGCGTGTCGGCGTTCATTGAAGAGTTACTCAAACCGCAAAACCAAAATGAGCCGGTCAAAAAGGCCATGGTCGACCGCAT GATCGCGGAGATCGACGCCAAGCTCAGCAGCCAGATGGACGAGATTCTGCACAACCAGAACTTCCAGGCACTGGAATCTTCATGGCGCGGCCTGAAACTG CTGGTCGATCGCACGGATTTCCGCGAGAACACCAAGCTGGAGCTGATCAACGCCTCCAAGCAAGACCTGCTCGAAGACTTCGAAGACAGCCCGGAAATCG TTCAGTCAGGCTTGTACAAGCACGTCTACACCGCTGAGTATGGCCAGTTCGGTGGCCAGCCAGTGGCGGCCATTATCGCCAACTACTACTTCGACCCAAG CTCGCCAGACATCAAGACCATGCAATACGTGGCCAGCGTTGCATCGATGTCGCATGCGCCATTCATTGCCGCCGCACGTCCTAAGTTCTTCGGCCTGGAA GCCTTCACCGGCTTGTCTGACCTCAAGGACCTCAAGGATCACTTCGAAGGCCCGCAATTTGCCAAGTGGCAGAGCTTCCGCGAGCAAGAAGATGCCCGCT ATGTCGGCCTGACCGTACCGCGCTTCCTGCTGCGTAACCCGTACGACCCGGAAGAGAACCCGGTCAAAAGCTTCGTTTACAAGGAAAACGTCGCCAACAG TCACGAGCATTACCTGTGGGGCAACACCGCCTACACCTTCGCCAGCAAGCTGACTGACAGCTTTGCCAAGTTCCGCTGGTGCCCGAACATCATCGGCCCG CAAAGCGGCGGCGCGGTTGAAGATTTGCCACTGCATCATTTTGAAAGCATGGGCGAAATCGAAACCAAGATTCCAACCGAAGTGTTGGTATCCGACCGTC GCGAATACGAACTGGCTGAAGAAGGCTTTATCGCCCTGACCATGCGTAAAGGGAGCGACAACGCAGCATTCTTCTCGGCCAACTCGACGCAGAAGCCAAA GTTCTTCGGCAACAGCGCAGAAGGCAAGAACGCAGAGCTCAACTACAAGCTCGGCACCCAGTTGCCGTACCTGTTCATCGTCAACCGCCTGGCGCACTAC TTGAAAGTGCTGCAGCGCGAGCAAATCGGTTCGTGGAAAGAGCGCACCGACCTCGAGCTGGAACTGAACAAGTGGATTCGCCAGTTTGTCGCCGACCAGG AAAACCCGAACGCAGAGATCCGTGGCCGTCGTCCACTGCGTGCAGCTCAGGTTGTGGTCAGCGATGTTGAAGGCGAGCCAGGCTGGTACCGCGTCAGCCT GAACGTGCGCCCGCACTTCAAGTACATGGGTGCGGACTTCACCCTGTCGCTGGTTGGCAAGCTGGATAAGGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCATCCATGTCATACGGCAGTCTATTTGAACGCATAGGTGGTGAACTTGATCGACGCGCCGGTTGGACGCGTGAAGCAAGCGCCATGGCGTCGGTGGCTG CCCACCTGGCAAAAATGCTCAGCACCCGGGCCGGCAGCGTGCAAACGCTCGCCGACTACGGGTTGCCCGATCTCAACGATATGCGCTTGTCATTGCACGA CTCGTTGCAACAGGCGCGTATCGCTATCGAACGCTTTATCGAGGCGTACGAACCCCGTTTACGTGAGGTCAAGGTTGTGTCTATGCCGCGCGACCATAAC CCACTGAATTTGGCCTTCGCGATTGAAGGCCTGCTTGAAGTAGCCGGCGTCAAGCGCCGCGTCAGTTTCGCTGCCAGCCTGGACGGCAGCGGCCAAGTCA CCGTTAACGCAGGAGAGCCCCGTGTCTGGTAAACCCGCCGCGCGAATCAGCGATATGACCGCCTGTTCAGGTCATAACAAAAACCCAATCGTAGAAGGTT
|
|
| Amino Acid Sequence |
>type VI secretion protein
MSTSAAKDTGGQATEVGLLDQIIAETRLTPDDEAYDIAKRGVSAFIEELLKPQNQNEPVKKAMVDRMIAEIDAKLSSQMDEILHNQNFQALESSWRGLKL LVDRTDFRENTKLELINASKQDLLEDFEDSPEIVQSGLYKHVYTAEYGQFGGQPVAAIIANYYFDPSSPDIKTMQYVASVASMSHAPFIAAARPKFFGLE AFTGLSDLKDLKDHFEGPQFAKWQSFREQEDARYVGLTVPRFLLRNPYDPEENPVKSFVYKENVANSHEHYLWGNTAYTFASKLTDSFAKFRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFIALTMRKGSDNAAFFSANSTQKPKFFGNSAEGKNAELNYKLGTQLPYLFIVNRLAHY LKVLQREQIGSWKERTDLELELNKWIRQFVADQENPNAEIRGRRPLRAAQVVVSDVEGEPGWYRVSLNVRPHFKYMGADFTLSLVGKLDKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|