Pseudomonas sp. S9, PSES9_RS0113015
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. S9 Contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACTCAGCGTTGAAGAAAAAGCCCAAATCGTAAACGACTACAAGCAAGCTGAAACTGATACTGGTAGCCCGGAAGTGCAAGTTGCACTGCTGTCTGCCAAC ATCAACAAGCTGCAAGGCCACTTCAAGGCCAACGGTAAAGATCACCACTCGCGTCGTGGTCTGATCCGTATGGTTAACCAGCGTCGTAAGCTGCTGGACT ACCTGAAGGGTAAAGATGTTAGCCGTTACAGCGCCCTGATCGGTCGCCTGGGTCTGCGTCGCTAAGCGATGCTTGCGCGTAGCTGAATGCTGAAGCTGGA AGTGGGTTTACCCCACTTCCAGCTTTTGTGTTTCAGCTACATGCATTTTGGACAGTCTCGGGCCGACTCCCGCAGCTGCCCACGAATTGTTTTATGCAAC ATTCAGGTGGTTTCGCAAAGCCCCATGTGCGTGTCTGACGCCGTCGCTTTTCGCAGCCCCTTCAGGTTTCCCCCAAGGCAATATAGAGAAGGAAAACACC
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| DNA Sequence for Gene |
>PSES9_RS0113015
GTGAACCCGGTAATCAAGAAATTTCAATTCGGTCAATCGACCGTTACCCTCGAGACAGGCCGTATCGCCCGTCAAGCCTCCGGCGCTGTGCTGGTCACAG TTGATGACGACGTAACTGTTCTGGTTGCTGTAACTGGCGCCAAGACCGCTGATCCGAGCAAGGGCTTTTTCCCACTGTCCGTGCATTACCAGGAAAAGAC CTACGCTGCTGGTAAAATCCCTGGTGGTTTCTTCAAGCGTGAAGCACGTCCTTCCGAGAAAGAAACCCTGACCTCGCGCCTGATCGATCGTCCGATCCGC CCGCTGTTTCCAGAAGGCTTCCAGAACGAAGTGCAGGTAATCTGCACCGTTATCTCCACCAGCAAGAAGACTGATCCGGACATCGCTGCGATGATCGGTA CTTCGGCTGCCCTGGCGATTTCGGGCATCCCGTTCAACGGCCCAATCGGTGCTGCGCGCGTGGCTTTCCACCCGGAAACAGGCTACCTGTTGAACCCTAA CTACGAGCAGCTCAAGGCTTCGAGCCTGGACATGGTTGTAGCCGGTACCAAAGACGCCGTACTGATGGTTGAGTCGGAAGCCAAAGAGCTGACCGAAGAC CAGATGCTGGGCGCTGTGCTCTTTGCCCACGATGAATTCCAGGTCGTGATCAACGCTGTTGCCGAACTGGCCGCAGAAGCCGCCAAGCCAACTTGGGACT GGCAGCCGAAAGCCGAGAACACTGCACTGCTCAACGCTATTCGTAGCGAGTTTGGCGATGCTATCTCCCAGGCTTACACCATCACCGTCAAGCACGAGCG CTATGCGCGCCTGGGCGAGCTGCGCAATGAAGTCGTTGCCAAGTTCTCCGGTGAAGAAGACCAGCCGACTGCCGGCGAAGTCAAAGACATCTTCGGTGAA ATCGAATACCGCACCGTACGCGAGAACATCGTTAACGGTCAGCCGCGTATCGATGGCCGTGACACCCGTACCGTGCGTGGCCTGAACATCGAAGTCGGTG TTCTGGACAAGACCCACGGCTCGGCCTTGTTCACCCGTGGCGAAACCCAGGCGCTGGTCGTGGCCACTTTGGGTACCGCCCGTGATGCACAGTTGCTCGA CACCCTTGAAGGCGAGCGTAAAGACCCGTTCATGCTGCACTACAACTTCCCACCGTATTCGGTTGGCGAGTGTGGCCGCATGGGCGCTACGGGTCGTCGC GAAATCGGTCACGGTCGCCTGGCGCGCCGTTCGGTCCCCGCCATGCTGCCAAACGCCGATGAGTTCCCGTACACCATCCGTGTGGTATCGGAAATCACTG AATCCAACGGTTCCAGCTCCATGGCTTCGGTCTGCGGTGCTTCCCTGGCGCTGATGGATGCCGGTGTTCCGATGAAGGCTCCGGTTGCCGGTATCGCCAT GGGCCTGGTTAAGGAAGGCGAGAAGTTCGCAGTCCTGACCGACATTCTCGGCGACGAAGATCACCTGGGCGACATGGATTTCAAGGTAGCGGGTACCGAC AAAGGCGTTACCGCGCTGCAGATGGACATCAAGATCCAGGGCATCACCGAAGAAATCATGGAAATCGCTCTGGGCCAAGCCCTGGAAGCGCGCCTGAATA TCCTCGGCCAGATGAACCAGGTTCTCGCCCAGTCGCGTACTGAGTTGTCGGCAAATGCCCCAACCATGATCGCGATGAAGATCGATCAGGACAAGATCCG TGATGTGATCGGTAAAGGCGGCGCGACCATCCGTGCGATCTGTGAAGAAACCAAAGCCTCGATCGATATCGAAGACGACGGTTCGATCAAGATCTTCGGC GAAACCAAGGACGCAGCTGAAGCCGCTAAGCAGCGTGTCCTGGGCATCACCGCAGAAGCTGAAATCGGCAAGATCTATGTCGGCAAGGTTGAGCGTATTG TTGACTTCGGCGCCTTCGTAAACATCCTGCCGGGCAAAGACGGCCTGGTGCACATCTCGATGTTGAGCGATGCTCGCGTTGAGAAGGTCACCGACATTCT GAAGGAAGGTCAGGAAGTTGAAGTGCTGGTACTGGACGTGGACAACCGCGGCCGTATCAAGCTGTCGATCAAGGACGTTGCCGCTGCCAAGGCATCGGGC GTTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGCGAGCTGTCTGTAGTCTAGAAAAGGGCCCCCTTGCGGGCCCTTTTTTTTGCGCTGTGATAATTGTGGTTTTGATTGTGTCGGGTGGGCGCGGCTGCT CAGCATTGAATGCCAAATGTTTTGCTCAGCTTGGCGGCCCCTTTTGGGGTCAAGGTGAGCGCCCTTGAGTCGAGGTGACGGCTCATCCAGCCTTGTTTAA GCATCAAGTTAAGTAATGCTGCTCCCAATGCACCGCCGATGTGTGGAGATCGCTCACTCCAATCCATGCAGGGGTAGGCCAGACGCCTGCGTTGGCTTAA TGCGCTGTCTACATCAAGCCCCAGTCGGGCAAGGCTGTCTGCTCCTTGTTCGCTCAGGCAGTAATCCTTGTCTTGTAGATAAATCCAGCCCTCATTCAGC AGTGCATCGTGCAACCCGACCGCAATCTCGCCTGCGCAATGGTCATAACAGGTTCTCGCATGCCTCAAGGCTGAAGGCGTGCTGGGTTTGAACCTCATTG
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| Amino Acid Sequence |
>polynucleotide phosphorylase/polyadenylase
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVTVLVAVTGAKTADPSKGFFPLSVHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIR PLFPEGFQNEVQVICTVISTSKKTDPDIAAMIGTSAALAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLKASSLDMVVAGTKDAVLMVESEAKELTED QMLGAVLFAHDEFQVVINAVAELAAEAAKPTWDWQPKAENTALLNAIRSEFGDAISQAYTITVKHERYARLGELRNEVVAKFSGEEDQPTAGEVKDIFGE IEYRTVRENIVNGQPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGTARDAQLLDTLEGERKDPFMLHYNFPPYSVGECGRMGATGRR EIGHGRLARRSVPAMLPNADEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLTDILGDEDHLGDMDFKVAGTD KGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMNQVLAQSRTELSANAPTMIAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG ETKDAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASG V
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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