Pseudomonas sp. S9, PSES9_RS0112035
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. S9 Contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGTCGCGCGAGGAGCAGGTCGATCCAATTACCCTTAAAGGCTCGTATGCAGGCGCGATGGGGCTGCCACAATTTATGCCGAGCAGCTTCCGCGCCTATG CCGTGGACTTTGATGGTGATGGTCATATCAATATCTGGAGCGACCCGGATGATGCGATCGGCAGCGTTGCCAGCTATTTCAAGCGTCATGGCTGGTTGCC GGGCGAGCCGACGGTCAGTCGCGCCAGTGTTTCCGGGGATAAGGTTGATCAAGGTTTGACCGAAGGCCTTGATCCGGTGAAAAATATCAATCAGCTAAAA GAGCTTGGCTGGACTACCACCGATAAGCTTGATGGCGAGATGCCTGTAACGGCTTTTCGTCTTGAGGGTGTCGATGGCGACGAGTATTGGTTAGGCTTAC CCAACTTTTACGTGATCACGCGCTACAACCGCAGCAGCATGTACGCGATGGCGGTCACTCAACTGGCCCAATTGATAGTCGAAGCACGGGGAACCCATTG
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| DNA Sequence for Gene |
>PSES9_RS0112035
ATGTCGAGCCTGCCACTCAGACTCATTACGCTTGGCGCTATCACCTTGGCGCTGGCAAGTTGCTCGTCTAAACAGCCCGTGGTCAAGCCAGTCGCCACGC AGCCCACAGGCATTAGTGGCCCTGGTAATTTTGCGCGCCCGCATCGGGACGGCGCGCCTTGGTGGGATGTCGATGTATCGCTGATTCGCGACGCAGTGCC GACACCGCACACGGGGCCTTACAAGGCCAGCCCTTATACCGTATTGGGCACCAAGTATTTCCCCATCCAGGACGGCAGTTCTTACCGTGCCACGGGCCTG GCAACCTGGTATGGCACAAAATTCCATGGGCAGGCCACTGCCAACGGCGAGACCTACGATCTCTATGGCATGACGGCCGCGCACAAGACCTTGCCGCTGC CAAGCTATGTCAAGGTGACTAACCTGGAAAATGGCAAGACCGCCATTCTGCGGGTCAATGACCGGGGCCCGTTCTACTCCGACCGGATTATCGACCTGTC CTTTGCCGCTGCGAAAAAGCTGGGATATGCCGAGAAAGGCACGGCCCGCGTCAAGGTGGAAGGCATCGATCCTAAACAATGGTGGGCAAAACAGGGCAAG ACTGCGCCAATGGTCTTGGCCGAACCCAAGTCAGTTGCGCCAGCAAAAACGCAAATGCAGGCCATGGCCGAGCCGATCGAGCAGTATGTACCGCCCGTAA GCCAGCATGCTGCGCCCGTATTGCCAGTTCAGGTCGACTCAAAAAAAAACGATTCACTCGCAGCCTCTGGCCTGTATCTCCAAGTGGGAGCCTTCGCCAA TCCGGACGCTGCGGAGCTTCTCAAGGACAAGCTGAGCGGGACAGTCACTGCCCCGGTGTTCATCAGCTCAGTGGTGCAGAACCAGCGGACCCTGCATCGC GTTCGCGTCGGTCCGATCAGCAATCAGGGCGAGGCTGAGCAATTGCAGGAAAGTGTGCGTCTGGCCAACCTGGGTAAACCCACTGTGGTCAAGGCCAACT GA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATTGGCGGCTCCAGTCAGCCAGTAAGCAGGCAGCAAGCTGTCGCGGCACCCAAGTGTTGCGACGGTCATTCATAATTTGCCCATTCGGGCTTGTTCCACC ATCAGCTACTTCGAGAGACGGATGAATATCACCAGCTTTGCGCAACGCGTTTCATTGTCACTTTTGCTAATTGCTGCGCCAGTCGCATTTGCCCAGCAAA TGGATACACCTGCGCCACCCCAGCTGGCGGCTAAATCCTATGTGCTGATGGATGCAGCAACAGGTCAGGTACTGGTTGAGAATGAAGGTGACCAGCGTCT GCCGCCTGCGAGCCTGACCAAGCTGATGACCGCCTATATCGCAACCCTGGAGATCAAGAAGGGGCAGATCAGCGAAAGCGATATGGTCACCATCAGCGAG CACGCCTGGCGCACAGGCGGCTCGCGTATGTTCGTCAAGGTTAATACCCAGGTGTCGCTGAGCGACCTGCTGCACGGCATCATCATCCAGTCGGGCAATG
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| Amino Acid Sequence |
>rare lipoprotein A
MSSLPLRLITLGAITLALASCSSKQPVVKPVATQPTGISGPGNFARPHRDGAPWWDVDVSLIRDAVPTPHTGPYKASPYTVLGTKYFPIQDGSSYRATGL ATWYGTKFHGQATANGETYDLYGMTAAHKTLPLPSYVKVTNLENGKTAILRVNDRGPFYSDRIIDLSFAAAKKLGYAEKGTARVKVEGIDPKQWWAKQGK TAPMVLAEPKSVAPAKTQMQAMAEPIEQYVPPVSQHAAPVLPVQVDSKKNDSLAASGLYLQVGAFANPDAAELLKDKLSGTVTAPVFISSVVQNQRTLHR VRVGPISNQGEAEQLQESVRLANLGKPTVVKAN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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