Pseudomonas sp. S9, PSES9_RS0110205
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. S9 Contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCGTTTGAGCTTGCAGGCTGTCTCGATCTTTTATTCCCCCATGGGCCCGCTGCCCGGCGTTACCGTATCCATAGGCTTGTCATCAAATTGCAGCCAGGA CACCTTGCAAAGCATGCTCACCCGGGCTGACAGCGCGCTCTATAAGGCCAAGCAGCAAGGACGCAACTGCCTGCGCCACTAAGGCATGGCTTAAAAACGA CTGCGCTCGATATTGCTGGGGCAGCCCTCGCTGGGGCAGCCCTTGCTGCGACCCCAAAGGGATGAGCAAAGCAAATCAAATGCTCATTGAGACCAACTAA GTCGAGCGCGACCCCGGTCGCTTTTTCGCATTTATTGCCCTGCCCTATCTTCGCTCGCTCCCCTTATCAGGAGTATCCCTAAAGCCAATCCGCCCATGAA TAGGCGGCTTGCCAACAGCAAACGGCTGTGGCACTTCGCCGCGCCGTGTTCTTGCTTTACACTGGCGCAGTTCACTCCTTAACCAATTGACGAGATGACC
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| DNA Sequence for Gene |
>PSES9_RS0110205
GTGCTCAAAGCACTAAAGAAAATGTTCGGCAAAGCCGACGGCGAGCAGCCAAGCCCAGTAAGTCAGCCAGCTGCGCCACTTGATACTGCACCAGTCAACA CCGGCCGCAACAGCAAAGCACGCGATAAAAACCGTGACTCAAGCAAAGCAAAGGCTGACGCAACTGGTGCGAAGCCAGCCCGCAATGACGCCTCTAAAGC GACAAGGCCACGCCGCGAGCGAGCCGCCAAACCGGTTGATAACTGGAAACTCAGCGATTTCGTGGTTGAGCCCGCTGAAGGCAAAACACGCTTTCACGAT TTCAACCTCACCCCAGGCCTGATGCATGCCATTCACGACCTTGGGTTTCCGTACTGCACGCCAATCCAGGCTGGGGTTCTGGGTTATACCCTGAGCGGCC AGGATGCTATCGGTCGCGCCCAGACCGGTACAGGTAAAACCGCAGCATTCCTGATCTCGATCATCACCCAGTTGCAGCAGACCCCTCCGCCGAAAGAGCG CTACATGGGCGAGCCACGCGCGCTGATCATCGCCCCAACCCGCGAGCTGGTCGTGCAGATCGCCAAGGATGCCCAGGACCTGACTAAATACTGTGACCTC AATGTCATGAGTTTTGTCGGCGGCATGGATTTCGATAAACAACTGAAGCTGCTGGAGTCGCGCTACTGCGACATCCTCGTGGCAACGCCTGGGCGCCTGC TTGATTTCAATCAGCGCGGCGAGGTTCACCTCGACATGGTTGAAGTGATGGTGCTCGATGAAGCCGACCGCATGCTCGACATGGGCTTTATCCCACAGGT TCGGCAAATCATTCGCCAGACCCCGATGAAAGGCGAGCGGCAAACCCTGCTGTTCTCGGCAACCTTCACTGAAGATGTCATGAACCTGGCCAAGCAATGG ACCACCAATCCGGCGATTGTCGAGATCGAACCGGAAAGCGTGGCCAGTGATACGGTCGAGCAACACGTTTATGCCGTTGCCGGCAGCGATAAATACAAGT TGCTGTACAACCTGATCGCGCAGAACGACTGGATTCGGGTGATGGTCTTCGCTAACCGCAAGGACGAGGTACGGCGAATTGAAGAGCGCCTGACGCGCGA CGGCATCAGTGCCGCGCAAATGTCGGGAGATGTCCCGCAGCACAAGCGGATCAAGGTGCTTGAAGGCTTTCGTGAAGGCAAAATCCGCGTTCTGGTGGCA ACCGATGTGGCTGGCCGCGGTATTCACGTTGACGCCATCAGCCACGTGATCAACTTCACCCTGCCCGAAGACCCGGACGATTATGTTCACCGCATCGGCC GAACAGGCCGTGCTGGCACCAATGGCACTTCGATCAGCTTTGCCGGCGAAGATGACGCCTACGCGCTGCCGCCAATCGAGCAACTACTGGGTCGCAAGAT TTCTTGTGAAATGCCACCCCATGAACTGCTAAAGCCGGTGCCCCGCAAAGGTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCGCACAGTTGAAACAGGCGAAGCCCAACAGCTTCGCCTTTTTTGTGCCTGCAACAAACCCAGCGTTGTCATACAAACTGTAGGGCGGGTGACGCTTTT ACCGCCCACCATTAAACGACCATCAAAATCGCAGGCAGATGCCGGTCATTGCACCTATGGTCGCTTGAGTCATGGTGTACAAGCTGCGCGTTGACCATCC TGCGCGCTAGTCTTGAAGCAATTAAATTGCGGAAATGGAGTCCCAAATGCGCCTGACACTAGAGCCCGCCGATCTGCGCAACGCCGTCGCTGCTGGAGTG CTTGCCCCCGGCCAAGACGCGGCATTGCTGAATTTTTTACAGCAGCAACATCCTGAACGGGCCAGTTTTCAACTGGCACACGTCGCCTACTACCTTGGCG CCATGTTGATCATCGGGGCCATGGGCTGGCTGCTGACCGAAGCCTGGATGAACATTGGCGAAGGCGCGCTGCTGCTATTCAGTGCGGCCTACATGCTGTT
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| Amino Acid Sequence |
>RNA helicase
MLKALKKMFGKADGEQPSPVSQPAAPLDTAPVNTGRNSKARDKNRDSSKAKADATGAKPARNDASKATRPRRERAAKPVDNWKLSDFVVEPAEGKTRFHD FNLTPGLMHAIHDLGFPYCTPIQAGVLGYTLSGQDAIGRAQTGTGKTAAFLISIITQLQQTPPPKERYMGEPRALIIAPTRELVVQIAKDAQDLTKYCDL NVMSFVGGMDFDKQLKLLESRYCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPMKGERQTLLFSATFTEDVMNLAKQW TTNPAIVEIEPESVASDTVEQHVYAVAGSDKYKLLYNLIAQNDWIRVMVFANRKDEVRRIEERLTRDGISAAQMSGDVPQHKRIKVLEGFREGKIRVLVA TDVAGRGIHVDAISHVINFTLPEDPDDYVHRIGRTGRAGTNGTSISFAGEDDAYALPPIEQLLGRKISCEMPPHELLKPVPRKG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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