Pseudomonas sp. S9, PSES9_RS0109105

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 21 541 6.0E-110
CDD cd06225 HAMP - - 217 261 2.06321E-6
Coils Coil Coil - - 471 491 -
CDD cd11386 MCP_signal - - 308 507 7.03161E-55
Gene3D G3DSA:1.10.287.950 - - - 214 542 1.5E-73
SMART SM00304 HAMP_11 IPR003660 HAMP domain 214 266 6.3E-6
SMART SM00304 HAMP_11 IPR003660 HAMP domain 301 361 38.0
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 326 509 2.3E-43
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 281 542 4.7E-80
FunFam G3DSA:1.10.287.950:FF:000001 Methyl-accepting chemotaxis sensory transducer - - 214 543 3.8E-95
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 236 542 6.28E-76
Pfam PF00672 HAMP domain IPR003660 HAMP domain 211 253 3.1E-6

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.