Strain | Pseudomonas sp. S9 Contig2, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CTGCGCATGATCGAAACCCTGGGTGCGCTGGTGCATGCCAATGATCGTGCCAGCCAGTTGATCAACGAGTTAATGGCCGGGCTGCAGCAGATCAGGCAAG TTGCCGAGCAACTGGCTTTCCGCCCTAAAGTCTACTTTGAGGAGTGGAACGAGCCGCTGATAAGCGGGATTGGTTGGGTCAGTGAATTGATCACGCTGGC GGGCGGGGACGACTGCTTTGCCGAGCTGGGCCATCTCAAGGCGGCCAAGCAGCGGATTATCGCCGATCCGGCCGAGGTCATTCGTCGTGCGCCCGACCTG ATAATAGGTTCATGGTGCGGCAAGCCTTTCCGACCTGAACAGGTGGCTGCGCGTCCGGGTTGGGAAAATATTCCGGCCGTGCGCAATCAACAGCTGCATG AGATCAAATCGGCAGATATCCTCCAGCCCGGTCCTGCTGCACTCACAGATGGCGTGCAGCAGCTACAGGCATTGATAAGAGGTTGCGTAGAAGCGCGCGG
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DNA Sequence for Gene |
>PSES9_RS0106205
ATGAGTTTGTTTTTGAGCACTGTTGCAGCGGTGGCAGCCGATGCGATCTTTGGTGAGTCCAAGGGTTGGCATCCCTTGGTGGCTTTTGGCCAGTGGGCCG AGCGAATTGAACAGCGGTTTAATCCGTCGGGCGCTGGCTGGCGCAGTCATGGTGTCAGTGCCTGGTGCCTTGCGGTCTTGCCATTGACCCTTTTGACCTG GTTGCTTAGCCAGGTGTCAGCCTTTGGTTGGTTTGTCGAAATAGTCGCGCTGTACATTGCCCTGGGATTGCGCAGTCTTGGTGAGCACGCACGACCCATA GTGCAGGCCTTGCGCCTGGGTGATCTGAGCCTGGCGCGTGAGCGGGTGGGGCACTTGGTCAGCCGCAACACGGAGCAGCTTGATGCCAGCGGGGTGGCGC GGGCAGGTACCGAGTCGGTTTTGGAAAACGGCAGCGATGCCGTGTTTGCCGCCTTGTTCTGGTTCATTATCGCCGGTGCGCCCGGGGTGGTGCTCTATCG CCTGAGCAACACCCTGGATGCGATGTGGGGCTATCGCAATCAGCGCTTTGAGCGCTTTGGCTGGGCGGCGGCGAAGATCGACGATGTACTTAACTACATT CCCGCACGTCTGGTTGCCCTGACGTATTCATTGCTTGGCAATACCCGGCAGGGCTTGCGTTGCTGGCGCCAGCAGGCGCCGCTATGGGACAGTCCAAATG CGGGGCCGGTCATGGCGGCTGGAGCAGGCGCCTTGAATGTGCAATTGGGTGGCGCGGCGCAGTACCACGGCCAGATGCACCAGCGGCCCGACCTTGGGGC TGGGCCGCAGGCTCGCGCCGCTGATATCGAACGGGCGCTCAACCTGGTTTGGGGTGGTGTAGTGCTTTGGTTGTTGTTGCTGGGTGCCTGGGAATTGTTC AGTGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GCACGGCGGACGCTTGCGCCTGGCCGCGTTGCAATACGGCATCGCGCTACCGGACTGGCTGGATTTGTCTACCGGTATTGCTCCCTATGGCTGGGCGCTG CCTGATATTCCTGCGTCCGCCTGGCAGCGATTGCCAGAGCCCGAGGATGGTCTGGAAGCGGCGGCACGCGATTATTATGGCTGCAGTTCGCTTTTAGCTG TGGCCGGTTCGCAAGCTGCAATCCAGGCGCTACCCCGGCTACGTCGTAGGTCGGTGGTCGGCATGCTGGCGCTGGCCTATGCCGAACATGCTGCTGCATG GCGCCGTCATGGACACAAGTTGCTCAGCTTCAGCGAAGCCAGTATCAATCGCGCCATTGATCGCCTGGATGTGCTGGTGCTGGTCAATCCGAATAACCCG ACCGGACGCCTTATCGAACCCGAGCAATTGCTGGCATGGCATGCGCGTCTTGCCGAGCGCGGCGGCTGGCTGGTGGTCGACGAGGCGTTTATCGACTGTA
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Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSLFLSTVAAVAADAIFGESKGWHPLVAFGQWAERIEQRFNPSGAGWRSHGVSAWCLAVLPLTLLTWLLSQVSAFGWFVEIVALYIALGLRSLGEHARPI VQALRLGDLSLARERVGHLVSRNTEQLDASGVARAGTESVLENGSDAVFAALFWFIIAGAPGVVLYRLSNTLDAMWGYRNQRFERFGWAAAKIDDVLNYI PARLVALTYSLLGNTRQGLRCWRQQAPLWDSPNAGPVMAAGAGALNVQLGGAAQYHGQMHQRPDLGAGPQARAADIERALNLVWGGVVLWLLLLGAWELF SA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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