Pseudomonas sp. S9, PSES9_RS0103190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. S9 Contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGCCTGACCGGTACTGACTTGCCGGTCATCCAGATAATTATGTAGTAGTGATGAAAAACCACTACAAAACGTTTGACGAACGCCTGGCAGCGATGCATT ATGGCCTCGCTCCCGCTAATCAGGGGCTCTGGAAAGAGCTTCCGGGTTGACTTCAGGCTTACCGCCCGAACAACCCGTGTTGTAAAAGCCCACAAGGCAG ATCGACGAGATTGCGACTGGAACGAAGTTGTCCTGAGGGACGGGGAAGCGCTTTCAACCGGCATGACCGTAACAGACACTGCATCGCCTGAGACATCCAC GAGTCGAACGGCGAAAAATGACCCGCTCATGAGCAGATACTGGCGTCATATCACTGGTCGACATCCCCACCTCTGATCCAACTCCGTATTTAGTCACTTT CTCTTTATCTGTTGTGAGCCCCCGCTGCTGGCATCTGTCTACTACAGTTGCCGAGCGGGAAAGCGGTGCTCAACCAAACACATACTTTGAAGGATTGACC
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| DNA Sequence for Gene |
>PSES9_RS0103190
ATGTCAGCTTATCAAAACGACATCAAAGCCGTTGCGGCCCTTAAAGAAGCCGCCGGCAACAGCTGGAGCGCTATCAACCCTGAGTCCGTTGCTCGCATGC GCGCTCAGAACCGCTTCAAAACCGGTCTTGATATCGCCAAGTACACTGCCGCCATCATGCGCAAAGACATGGCCGAGTACGATGCTGACAGCTCGGTCTA CACCCAGTCGCTGGGTTGCTGGCATGGTTTTATCGGTCAGCAGAAGCTGATTTCGATCAAAAAGCACCTCAAAACCACCAACAAGCGCTACCTCTACCTG TCGGGCTGGATGGTTGCTGCACTGCGTTCCGACTTCGGCCCACTGCCCGACCAGTCGATGCACGAAAAAACCGCAGTATCCGGCCTGATCGAAGAGCTGT ACACCTTCCTGCGTCAAGCCGACGCCCGTGAGCTTGACCTGCTGTTCACCGACCTGGATAACGCTCGCGAAGCTGGCGACAAGGCCAAGGCCGCTGAAAT CCAGGACAAGATCGACAACTACGAAACCCACGTAGTACCAATCATTGCCGACATCGATGCAGGCTTCGGCAACCCTGAAGCCACCTACCTGCTGGCCAAG CGCATGATCGAAGCAGGCGCGTGCTGCATCCAGATCGAAAACCAGGTTTCCGATGAGAAGCAGTGCGGCCACCAAGACGGCAAGGTAACTGTTCCGCACG AAGACTTCCTGGCCAAGATCAACGCTGTTCGCTACGCCTTCCTTGAGCTGGGTATTGACGACGGTGTAATCGTTGCCCGTACCGACTCCCTGGGTGCAGG CCTGACCAAGCAGATCGCAGTGACCAAGACTCCGGGCGACCTGGGCGACCAGTACAACTCGTTCCTGGATTGCGAAGAAGTTTCGGCTGCCGACCTGGGC AATGGCGACGTTGTGATCAACCGCGGCGGCAAACTGCTGCGTCCTAAGCGCCTGCCAAGCAACCTGTTCCAGTTCCGCAAGGGCACAGGCGAAGATCGCT GCGTACTGGACTGCATCACATCACTGCAGAACGGCGCCGACATGCTCTGGATCGAAACCGAGAAGCCACACGTTGGCCAGATCGCAGCCATGGTCAACCG CATCCGCGACGTGATCCCGAACGCCAAGCTGGTTTACAACAACAGCCCATCGTTCAACTGGACACTGAACTTCCGTCAGCAAGTGTTCGATGCATTCGTC GAGCAAGGCAAGGACGTGTCTGCATACGACCGCGCCAAGCTGATGAGCATCGAGTACGACAACACTGAGCTGGCTCAGGTTGCTGACGAGAAGATCCGCA CCTTCCAGCGTGATGGTTCAGCTCAGGCCGGTATCTTCCACCACCTGATCACCCTGCCGACTTACCACACGGCTGCACTGTCTACCGACAACCTGGCAAA AGGCTACTTCGCAGACCAGGGCATGCTGGCCTACGTTAAAGGCGTCCAGCGTGAAGAGCTGCGCCAAGGCATCGCCTGCGTCAAGCACCAGAACATGGCT GGCTCCGACATCGGTGACAACCATAAAGAGTACTTCGCTGGCGAAGCAGCTCTGAAGGCTGGCGGTAAAGACAACACCATGAACCAGTTCAGCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGAACCAGTTCAATCCACGGCTGTTAATGCGTGATAAAGCCCGGCACAACTGCCGGGCTTTTTTATTGGGCAGGCAAAAAGAGCCATAAAAAGCTGAT CAAATGGTCAGCTTATTTGAATCCGTGCAGAGTTCGACTTAATATGGCGCGTATAAATAAACCTGCGCTGTTTGTTTTGGATACAATTTGGCGCAAATAG TCATACTTGCCTAGTATTGAATTGGCCGATGTGGCAAGATTCACCCCGAATAAAAATGTAACTAAAGTCTTCGGTTACGAGGTACGAATAGCATGTCAGA CCCAGTCTCCAATTTTTCCCAAAACTGGGCGTTTGCTGTATTCATCCTCGGCGTTTTCGCCCTTATCGCCTTTATGCTCGGTCTATCCAGCTTGCTCGGC AGCAAAGCCTGGGGACGCAGTAAAAACGAACCTTTCGAATCGGGTATGCTGCCAACCGGCACCGCACGCCTGCGCCTCTCGGCAAAGTTTTATTTGGTCG
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| Amino Acid Sequence |
>isocitrate lyase
MSAYQNDIKAVAALKEAAGNSWSAINPESVARMRAQNRFKTGLDIAKYTAAIMRKDMAEYDADSSVYTQSLGCWHGFIGQQKLISIKKHLKTTNKRYLYL SGWMVAALRSDFGPLPDQSMHEKTAVSGLIEELYTFLRQADARELDLLFTDLDNAREAGDKAKAAEIQDKIDNYETHVVPIIADIDAGFGNPEATYLLAK RMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKINAVRYAFLELGIDDGVIVARTDSLGAGLTKQIAVTKTPGDLGDQYNSFLDCEEVSAADLG NGDVVINRGGKLLRPKRLPSNLFQFRKGTGEDRCVLDCITSLQNGADMLWIETEKPHVGQIAAMVNRIRDVIPNAKLVYNNSPSFNWTLNFRQQVFDAFV EQGKDVSAYDRAKLMSIEYDNTELAQVADEKIRTFQRDGSAQAGIFHHLITLPTYHTAALSTDNLAKGYFADQGMLAYVKGVQREELRQGIACVKHQNMA GSDIGDNHKEYFAGEAALKAGGKDNTMNQFS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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