Pseudomonas taeanensis MS-3, TMS3_RS0122530
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_09, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACATTCGCCGGCCCGCCTGAGGCCGCAGAACCGCCCCTGCCAGAGGGGCTATGCGCCACCCGCGTGCCACTGATCAAGCTGGCCGTGGCCCGCTCCGGCG ACAAGGGCAACCACAGCAATATCGGGGTGATGGCGAGAAAGCCCGAGTATCTGGCGTGGATCGCCGCTGCATTGAGTGAGGTCGCCGTGGCCGAATGGCT GCAGCACGTTCTGGACCGAGAAACCGGCCAAGTCAGTCGCTGGTACCTGCCGGGCAGTCACAGCCTGAACTTCCTACTGGAAAACGCCCTGGGCGGCGGC GGTATCGCCAGCCTGCGCATCGACCCGCAAGGCAAGGCCTTCGCCCAGCAGCTACTGGAATTCCCGGTGCCAGTGCCCAGGGCACTGGCCGACAGTCTGT AGGAGCGAGCTTGCTCGCGATCAGCCACAACGCATGAAGCATCGCCAGCAAGCTGGCGCCTACCAGAACAAATGCAGGCGCAACGAGGAGCAGAACAACC
|
|
| DNA Sequence for Gene |
>TMS3_RS0122530
ATGGCATACGACTCCAACTTCAAACCCGGCCTGTTCGCAGGCCAGATCATCCTGGTCACCGGTGGCGGTAGCGGTATCGGTCGTTGCACCGCCCATGAAT TGGCGGCCCTGGGCGCTCATGTGGTACTGGTCGGGCGCAAGCTGGAGAAATTGGAAAAGGCCTGCAGCGAAATCATCGAGGATGGCGGCCAAGCCAGTTT CCAGGTCTGCGACATTCGTGACGAGGACGCAGTAAAGGCCATGGTCGCGCAGGTTGTCGCCGAACATGGACCGATTCATCACCTGGTCAACAACGCCGGC GGTCAGTACCCCGCACCGCTCGCCTCGATCACCCAGAAAGGCTTCGAGACCGTGGTGCGCACCAACCTGGTCGGTGGCTTTCTGGTGGCCCGCGAAGTAT TCAACCAGAGCATGAGCAAGACCGGCGGCAGCATCGTCAACATGCTCGCCGACATGTGGGGCGGCATGCCCGGCATGGGCCACTCCGGCGCGGCGCGCGC CGGCATGGAAAACCTCACCAAGACCGCCGCCGTCGAGTGGGGCCATGCCGGAGTACGGGTCAATGCGGTGGCTCCGGGCTGGATCGCTTCCAGCGGCATG GACACCTATGAAGGGGCGTTCAAGGCGGTGATCCCGACCCTGCGCGAGCATGTGCCGCTCAAGCGCATCGGCAGCGAATCGGAAGTCTCCGCCGCCATTG TCTTTTTGCTGTCGCCGGGCGCCGCATTTATCAGCGGCAACTGCATCCGCATCGACGGCGCCGCCAGCCAGGGCAGCCGGGCCTTCCCCCTGTTCAAGGC GACTCCTGGGCTGAGCAAGTCCTACAACGGCTTCCATCGGGCCTATCTGCCCGATGTGCTGAAAGAACAAGAGGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGATGCCGGTGATCCAGTCCGAGATCGACGTACACAGCCCAGACTTCGCGAAGAATCGCCAAGCCATGCTGACCGCCGTGGCTAGCTTTCGCGAAGTCG AACAGCAGTGCCTGCACAAGGCCTGCGAGGCCAAGGCCAAGTTCGACAAGCGCGGCCAGTTGCTGCCGCGTGAACGCCTCAACCTGCTGCTCGACGCTGG CGCGCCCTTCCTCGAACTGTCCTCGCTGGCCGGCTACAAGCTGCACGACGACAAGGACGGCACCCAGGCCGGCGGCGGCATCATCTCCGGCATCGGCTAC ATCGCCGGGGTGCGTTGCCTGATCAATGCCAGCAACAGCGCGATCAAGGGCGGCACCATTTCACCCAGCGGCCTGAAGAAAACCCTGCGCCTGCAGCAGA TCGCCTTCGACAACAAGCTGCCGGTGGTGACACTGGCCGAAAGCGGCGGCGCCAACCTCAACTACGCGGCGGAAATCTTCGTCGAAGGCGCACGTGGCTT
|
|
| Amino Acid Sequence |
>2,4-dienoyl-CoA reductase
MAYDSNFKPGLFAGQIILVTGGGSGIGRCTAHELAALGAHVVLVGRKLEKLEKACSEIIEDGGQASFQVCDIRDEDAVKAMVAQVVAEHGPIHHLVNNAG GQYPAPLASITQKGFETVVRTNLVGGFLVAREVFNQSMSKTGGSIVNMLADMWGGMPGMGHSGAARAGMENLTKTAAVEWGHAGVRVNAVAPGWIASSGM DTYEGAFKAVIPTLREHVPLKRIGSESEVSAAIVFLLSPGAAFISGNCIRIDGAASQGSRAFPLFKATPGLSKSYNGFHRAYLPDVLKEQEE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|