Pseudomonas taeanensis MS-3, TMS3_RS0121540
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_09, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCTCGCCTATCGACGGCATCGTCCTGGGCCTCAATGCCTCGACCATCGGCGGCGTGATCCAGCCGGGCTCAGTGATAATGAATGTGGTACCGGCAAAC GAACCGTTACAGGTTGACGCCATGATCCCGGTACAGGCCATCGACAAGATGACCCCAGGTTTGCCCGTGGACATCACCTTCCCGGCCTTCAACCATGCCC AAACACCGAGCATTCCCGGCCGGGTGCTGACTGTCTCGGCTGACCGTTTGGTCGATGAGAGCAACAAACAGCCCTACTACCTCGCCCAAGTCGAAGTCAC GCCAGAAGGCATGGACAAACTCGGCAGCAATCGCATTCGCGCCGGCATGCCGGCCACGGTGACAATCAAAACGGGTGAACGCAATCTAATGAGTTATCTT ATGAAACCAATGCTCGACCGCGTCGACAATGCCTTCAAGGAGCAATGAGACAGTGCCTTTAAGAAACAATAATAAAGCGGTCCGTTCAGCTCTCTTCTAC
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| DNA Sequence for Gene |
>TMS3_RS0121540
CTGGCCGGTTTGGCTAGCCTGCCTGTAGCGGCAATGGACCTGCAACAAGCCTGGGAAACCCTGCAATTGCAAGGACCGACCTACCGCTCTGCTGTCTATG AGCGCGATGCCGGCCTGGAAAATCGCGCCTTGGGACGCGCAGGTTTACTGCCACAAATCAACGCCAGCGCCAGTAAAAATCGCGTCAATGGCACTCAGGA ACAATCTGGCCTGACTGGCGGCTCTGTCGAACGCGACCTTGATTACGACTCGGAAAACCTCGCGGTGCGACTGCGCCAACCGCTGTTCAACCGTCAGAAA CTCGCCGAGTACCGCCAAGGCAAACAACGCGCCGAATACAGCGAAGCCGTTTTCGACGCCAAGACGCAGAACGTCGCCGTACGCTTGGCCAACCGCTATT TCGATGTACTGCTGGCGCGTGAAACCATCGATTTGTCGAACGCCAAACTTAATGCACTCGAGCAACAGGTGGCATCATCACAGCGACGTTACAAACTCGG CGATGGCACTATCACCGACGTCTATCAGTCTGCCGCGCGGCGTGACCTGGCCCTGGCCGAACAGATCGAAGCCCAAGATAACCTGCTGATCTCTCTGCGC CTGCTGCAGGAGATGCTCGGGGAGGTGCCACAACAGGTCGCCACCTTGCGTCGAGGCTTTCCCACTCCGCCCTTACACCCCAACAACCTGCAGGCATGGA TGGACAAGGCCCAGGCGAATAATCCGGCACTGCGGGCCCGGGACTACAGCCAACGGGTCGCGGAAGAAGAAGTCAATCGGGCCAAGAGCGGGCACTGGCC GACCCTCGATCTGGTGCTGGGTTACACCGACAGTCAAAGTGACTCCATTTCGACCATCGATCAGCAGAACCGTTACTCCTCGATTGGCCTGGAGTTCAAT ATGCCACTGTTCGCCGGTGGTGCGACCAGCGCCAGAGTGCGCCAGGCAGTAGCTAGCCGCGATCAGTCCGGTGAGGACTTGAATGCCACGCGCGAAGAAG TCTTCTCGTCGACCACCCGCCAGTTTCGTGGTGTACAAAGCGGACAAGCGCGGATCAAGGCTCTGGAAAATGCCGTCATGTCGAGCGAGCGGGCTCAGGA CGCGGCGAAGAAAGGTTTCCTTGCGGGCTCCAGCACCAACGTCGATATCCTCAACGCCGAGGAGCAGGTGTTTATCGCCCGCCGTGACCTGCTGGAAGCC AAGCTCCGCTATTTACTCGCACGCTTACAGCTGTCGGCAGCCGTAGGACTGCTCGGTGACGATGACATCAGCCAAGCCAACGCTTATCTCGGCCCTGAAC TGTCTTTGAGTTATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGTCATCAGCGCCAATGCCGGGTCTGTGTGCGCGTGTCTTGCCCGGCGCCGAATACCCAAGCAATCGCCAACAGGAGCAATTCCACCAACCAGGCCAAA AGCAAGGCGCAGACGATCCCCCAGGCAATCGCTTCGGGGACCAGCAGCACTTGATAGCGATAGGCCGCGTAAGTTTCTTCCAGCAACTCGGAGTCGGCCG CGATAGTCAAATGCCAGACCTGTGCGTACCAAGGGCCTTGCATGGCGCGCAACTCAGCGTCGAGAAAGTGACCACGTTCGACCAATCGACCTACGCTTTG CGCATCGCTGCGCATTACCGAGTCGTCACTGACCCGGTAATGCGCCACCAACGCATCGAGATCGTCTTTGAAGAAGCGCTTGGCGGTTTGACGAAAGCCT GTCAGCGCTCGTTCGGACTCCAGCTGGTGCGCTTCGACGCGTTTGGCATAGTCGTCGATAAAGCCCGGAACCTGCACCCCGAGCAACAACCCCAGGGCAA
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| Amino Acid Sequence |
>channel protein TolC
MAGLASLPVAAMDLQQAWETLQLQGPTYRSAVYERDAGLENRALGRAGLLPQINASASKNRVNGTQEQSGLTGGSVERDLDYDSENLAVRLRQPLFNRQK LAEYRQGKQRAEYSEAVFDAKTQNVAVRLANRYFDVLLARETIDLSNAKLNALEQQVASSQRRYKLGDGTITDVYQSAARRDLALAEQIEAQDNLLISLR LLQEMLGEVPQQVATLRRGFPTPPLHPNNLQAWMDKAQANNPALRARDYSQRVAEEEVNRAKSGHWPTLDLVLGYTDSQSDSISTIDQQNRYSSIGLEFN MPLFAGGATSARVRQAVASRDQSGEDLNATREEVFSSTTRQFRGVQSGQARIKALENAVMSSERAQDAAKKGFLAGSSTNVDILNAEEQVFIARRDLLEA KLRYLLARLQLSAAVGLLGDDDISQANAYLGPELSLSY
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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