Pseudomonas taeanensis MS-3, TMS3_RS0117980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_05, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTGCTAGAGGTACGCAAAAGCAAAGGTCAATGGGCGCGTCTGCACTGGGGGCTGCTTAAGAAAGAGTACAAGGCCAACAACGGACGTAACTTTCTCAGT TATTCCGATTTTGCGTTGCTACTGGGTGGAATGCTTTTTTCGCCTTTCAATACCGTACAAAACTTCACCTACTCAATCGCCAAGCGTCGTGCCCGTAGCC AATGGCCAACGCTGGTAAAAGAGCGCCTGCGCCCGGACGGGCCGAGCAATCGGTTGGTTGATCTGGAACGGGCGGAGAAGCAATGAACAACTGCTCTGTC CACACAATGCAGCCCTCAGTGAGCATCCGTACAAGCACCGCGGTAGTCGCTCTCATTTCCGGCCGCCCATCACCCCGTTTTATGAACCAGATCAACCTGA GCAAGCCGCGCATTGCACTCCAATACGCGCCCCCAAGTATCACTTCGCCATCACGCTAGCGCGCCTGGCGCGTCACCCACACTTTCAAGGAGGAAATTGC
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| DNA Sequence for Gene |
>TMS3_RS0117980
ATGCACAAAAAACGCTATTACCCCGCCGCCCTGCTCGCCCTGGCCCTGTGCCTCACCGGCTGCAGCGGTAACTACAAGTTCAGCGACGACGATTACCGCC CCCTGGGCGACCCGCAAGCAGAAACTCGCGGCAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGCAAGGAGCTAAACACCATGGAACTGGTCTTCGATGTGGTCAGTGCACAGCAGTTCGTGCCAGGTCTATTGACCACCAAAAGCTTCAAGCACGCCGGC GGCATTATCGGTCGTGCGGAGGACTGCGATTGGGTGATTCCCGATCGCAAGCGCGTGTTGTCCAGCCGACATGCCGCGGTGAGCTTTCGTGACGGTGCGT TCTACCTGACCGACACCAGCAGTAACGGCGTGCAGCTGAAAGACAGCGGCGCCAGCCTGCCCAAGGGCCAGCCTCAGCGTATCGATCACGGCAGTGTGTA TTGCCTGGGTGATTTCGAGATCCGTGCGCGGCTGACCCAGGACCCGGCCGTATTCGAGGCCGATATCGGCCGCTCGCAGCCGGCCGGCAGCATCATTCCG GATGACGCCTTCCTCGATCTCGACCCGCTCACCGCCCTCGATCAGCAGGAACGGGTCTATGCCGAGGTCGACGACCTGACTGCAATCATTCGCCCTCACA
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| Amino Acid Sequence |
>type VI secretion protein
MHKKRYYPAALLALALCLTGCSGNYKFSDDDYRPLGDPQAETRGN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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