Pseudomonas taeanensis MS-3, TMS3_RS0117415

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00114
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 72 329 2.7E-106
Gene3D G3DSA:1.10.150.20 - - - 624 703 9.5E-7
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 331 404 1.6E-34
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 618 793 2.6E-29
Pfam PF14520 Helix-hairpin-helix domain - - 472 526 0.0052
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 331 404 2.3E-32
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 10 474 0.0
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 456 530 1.6E-29
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 619 706 3.38E-6
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 704 790 1.4E-22
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 333 414 2.91E-28
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 538 557 120.0
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 717 788 4.86E-17
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 715 786 1.7E-9
SMART SM00292 BRCT_7 IPR001357 BRCT domain 715 792 9.3E-10
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 72 329 4.3E-99
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 12 331 7.0E-126
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 531 609 5.4E-23
Gene3D G3DSA:1.10.150.20 - - - 531 611 1.6E-23
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 6 71 1.0E-28
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 71 6.2E-29
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 336 412 1.2E-34
CDD cd17748 BRCT_DNA_ligase_like - - 718 787 6.90382E-24
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 18 613 0.0
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 13 331 0.0
Gene3D G3DSA:1.10.150.20 - - - 456 530 5.8E-29
Gene3D G3DSA:6.20.10.30 - - - 405 455 8.5E-13
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 20 772 3.5E-50
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 506 525 150.0
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 536 599 8.1E-20
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 2 627 0.0
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 418 609 1.45E-51
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 9 789 52.940857
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 422 460 9.1E-10
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 663 682 1500.0
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 11 330 1.3E-118
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 472 491 1.4

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.