Pseudomonas taeanensis MS-3, TMS3_RS0115230

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0005515	protein binding	ISM Inferred from Sequence Model Term mapped from: InterPro:SM00228	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0004252	serine-type endopeptidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00834	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006508	proteolysis	ISM Inferred from Sequence Model Term mapped from: InterPro:PR00834	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	270	371	1.1E-26
PANTHER	PTHR22939	SERINE PROTEASE FAMILY S1C HTRA-RELATED	-	-	28	363	3.0E-97
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	387	474	3.81E-14
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	130	150	6.2E-53
Pfam	PF13365	Trypsin-like peptidase domain	-	-	100	233	6.7E-34
SMART	SM00228	pdz_new	IPR001478	PDZ domain	386	465	1.6E-11
Pfam	PF02163	Peptidase family M50	IPR008915	Peptidase M50	241	372	4.6E-9
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	226	243	6.2E-53
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	170	194	6.2E-53
Gene3D	G3DSA:2.40.10.120	-	-	-	27	265	4.7E-84
Pfam	PF13180	PDZ domain	IPR001478	PDZ domain	274	362	5.1E-15
SUPERFAMILY	SSF50494	Trypsin-like serine proteases	IPR009003	Peptidase S1, PA clan	7	281	9.2E-69
FunFam	G3DSA:2.40.10.120:FF:000007	Periplasmic serine endoprotease DegP-like	-	-	28	265	1.2E-100
Gene3D	G3DSA:2.30.42.10	-	IPR036034	PDZ superfamily	382	476	2.6E-17
NCBIfam	TIGR02037	JCVI: Do family serine endopeptidase	IPR011782	Peptidase S1C, Do	29	472	0.0
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	109	121	6.2E-53
SMART	SM00228	pdz_new	IPR001478	PDZ domain	272	354	1.2E-14
Pfam	PF13180	PDZ domain	IPR001478	PDZ domain	388	468	9.1E-10
CDD	cd00987	PDZ_serine_protease	-	-	272	361	1.12158E-24
SUPERFAMILY	SSF50156	PDZ domain-like	IPR036034	PDZ superfamily	255	361	2.63E-21
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	204	221	6.2E-53
PRINTS	PR00834	HtrA/DegQ protease family signature	IPR001940	Peptidase S1C	312	324	6.2E-53
CDD	cd00987	PDZ_serine_protease	-	-	387	472	1.4885E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.