Pseudomonas taeanensis MS-3, TMS3_RS0114275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_04, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGAAAAATGTTTTATTCGCCGTCAAATCGAGTGTGCCACGTATTTGGCGTCAATTTAGTGTGCATGCGCAAGGGGCGGCGAATTTTGAGACTTACCTA ACATCTTGCCGGGGAGGTTTCTGTCTAGCAGGTGCATGCCAGGCTAGCGTAATCGGGGGTGTAGCCTAAGCGCTGGTGAGTTACGCGGGTGTCAGGTGTT GGCTGGCTTGAAGGCCACATGGCTGCGTTGTTTGGCTGACCGGCTTACCTCAGTGTTTTCGATTTCTGATCGCTATTGCCGCGACTATATCGTCCGCTCC ATGTTCTAGTCGTGCTGGAAGGAGGGAGTCATAGACTTGCTCTGTGGTTATCATGGCTAACTGTCGAGCGCCCACTCGTCGGAATGCTGCGCGGGGCATG TTTCTGAGGGCTGTGCGGCGCTTAATCCAATGGGAGTGCGTCAGTAAGAGTGGGGATAAATCGATTTTTCTTGATTGTCGGTCAGTAAAATCAATTGCTT
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| DNA Sequence for Gene |
>TMS3_RS0114275
ATGTCTCAAAGAAAAATCATCCACGTTGATTGCGACTGCTTTTACGCCGCCATCGAGATGCGCGACGATCCAAGCCTGGCCGGTAAGCCTCTGGCGGTGG GCGGCGCGGCGGATCGTCGTGGAGTGATTGCCACCTGCAACTATGAAGCCCGTGCCTATGGGGTGCGTTCGGCGATGGCCTCCGGGCATGCGCTGAAGCT GTGCCCGGAGTTGCTGATCGTCAAGCCGCGAATAGATGTCTATAAGGCGGTTTCGCGGGATATTCAGGCAATTTTTCGCGATTACACCGAGGTCATCGAG CCGCTGTCGTTGGACGAGGCCTACTTGGATGTGTCTGACAGCCCGCACTTTGCCGGCAGTGCCACGCGCATCGCCCGGGAGATCCGCCGCAGGGTGTCGC AGGAGCTGCATATCACTGTTTCGGCAGGCGTGGCGCCAAACAAGTTTCTCGCCAAAATTGCCAGTGATTGGAAAAAACCTAACGGTTTATTCGTGATTAC TCCGGATCAAGTCGAGGCGTTCGTCGCGGCGTTGCCAGTCAGCAAGTTGCACGGTGTGGGCAAGGTGACTGCGGACAAGCTGGGCCGTTTGGGGATTCGC AGCTGTGATGATCTGCATGGATGGGATCGACTCGCCTTGGTGCGCGAGTTTGGCAGTTTCGGTGAGCGTCTGTGGGGGCTGGCGCGAGGCATTGATGAGC GTCCGGTGCAGACTAATAGTCGTCGCCAGTCGGTCAGTGTTGAAACCACCTATGAGCATGACCTGCCGGATGTGACGGCCTGCTTGGCGCAATTACCCCA GTTGCTGGAAGAGCTCGATAGGCGGATGGCGCGGCTGGATCCGAGTTACCGGCCGGATAAGCCCTTCGTCAAAATAAAGTTCCACGACTTTAGCCAGACC ACCCTCGAACAGGCCGGCGCACGCCGCGACCTGGACAGTTACGGGCTGTTGCTCAGCGCGGCGTTTGCCCGTGGCAACAAGCCGGTGCGGTTGTTGGGTG TGGGTGTGCGCCTGCATGATCTGCGTGGCAGACAAGAGCAGCTGGAGCTGTTTGCGCCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGGGAGAGGCGCGCGTGGGTGGTCCAGGCAAGCAGTCGGATCTGGCGCGGCGCAACCTAGCATTGCAGTGTGGCTGCAAGCGCGGTGCTGGGGTACGC GGCGTCCAGAGGCGCCGCCGGCTGCACGGTAGTGGTGCGCGGCGCGGCTCAGGGCTCCCTTTCGCCTCGTGGCTCAGCCTTCTGCCGGCCAGAGGCGTAG CGGTTTGCCGGCAGCGGGCCACAGGCGCAGTTGCTGGATCGGCGAGACGTCCCAGCGCTGCACCTTGGCCAGGTTTGCGAGGAACCGTGCTTCCTGCTCC ATCAGTGCAGGAGCGCAGAGCTTGCGGGTGCTGCCAGCGGCGCCGAAGCTGAGTTTGTCACCGGCCAGGGTATAGCTGGCGAACCAGTGGTTACAGCCTG CGTTGCCATAGGCGCGGCCGTCTTCTCCGAGGGTCAGGCTCAAGCGGCTGCGGTCGATCAGCGGACGCTCGCCGATCCATTCCACTTGATAGGTGCGCTC
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| Amino Acid Sequence |
>DNA polymerase IV
MSQRKIIHVDCDCFYAAIEMRDDPSLAGKPLAVGGAADRRGVIATCNYEARAYGVRSAMASGHALKLCPELLIVKPRIDVYKAVSRDIQAIFRDYTEVIE PLSLDEAYLDVSDSPHFAGSATRIAREIRRRVSQELHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEAFVAALPVSKLHGVGKVTADKLGRLGIR SCDDLHGWDRLALVREFGSFGERLWGLARGIDERPVQTNSRRQSVSVETTYEHDLPDVTACLAQLPQLLEELDRRMARLDPSYRPDKPFVKIKFHDFSQT TLEQAGARRDLDSYGLLLSAAFARGNKPVRLLGVGVRLHDLRGRQEQLELFAP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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