Pseudomonas taeanensis MS-3, TMS3_RS0113615

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 233 311 1.4E-17
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 227 310 1.4E-23
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 2 204 1.8E-53
Gene3D G3DSA:1.10.10.60 - - - 210 315 7.8E-24
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 264 314 1.25E-8
PANTHER PTHR43130 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 2 250 9.1E-53
CDD cd03137 GATase1_AraC_1 - - 6 189 6.90578E-89
Pfam PF01965 DJ-1/PfpI family IPR002818 DJ-1/PfpI 4 171 7.3E-13
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 3 192 8.06E-49
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 210 260 2.6E-9

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.