Pseudomonas taeanensis MS-3, TMS3_RS0113570
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_03, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAACGCCGCCTGGCTGCCCTGCTGATCCAGCACCGAGAAAAACTCCTTGCGACGCCAGGCGGCTGCGCCATGGGCATCGATAAACAGGCGCGTGGTCG CCTGCGCCTCGGTGCGGATGCCATCGTACACCGGCAGTTTGTTGGCCCCACGCTCGACGCCTGCGCCGCTGCCCAGGTTGAGCTGGCAGGGTGAGTCGTA GCAGGCGTGGCAGGCTACACAATTGTGGGTAAAGATCGGCTGTATCTCGCGGCTATAGGACACCGGCTCGGCCGCCAGTAGCGGGCCGAGCAACAACAAG CAAGCGCCAAACAGTGCGCGAAACGCCATGAGCCTTCTTCCTAAAGGGTATGGAGGTGAATTCTAACTGGCGAGCAGGGACTAAAGCGAACCGCCCAAAC ATGAGACAAATTCATGTAAACACCCTGCCTGCTACAAATCCACGCAGCTTTGTTATCATTGCGCCCTCTCTGTTTCAGCTTTGCTCAGGTAGTTCCGTCC
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| DNA Sequence for Gene |
>TMS3_RS0113570
ATGTCGCTTTCCGATCGCAGTGCCCGCCTCCATGCTCTCCAGCAAGCCCTTCAGGAACGCATCCTGATCCTCGATGGTGGCATGGGCACCATGATCCAGA GCTACCGGCTGGAGGAAGAGGATTACCGCGGCGCGCGCTTCGCCGACTGGCCGAGTGATGTCAAAGGCAACAACGACCTGCTGATTCTCAGCCGCCCGGA CGTAATCGGCGCCATCGAGAAGGCCTACCTGGATGCCGGTGCCGACATCCTCGAGACCAACACCTTCAACGCCACCCGCGTATCCCAGGCCGACTACGGC ATGGAAGAGCTGGCCTATGAGCTGAACGTCGAAGGCGCGCGCCTGGCGCGTCAGGTGGCCGACGCCAAGACCGCCGAGACCCCTGAGCGTCCGCGCTTCG TCGCCGGCGTACTGGGTCCGACCAGCCGCACCTGCTCGATCTCACCGGACGTCAACAACCCCGGCTACCGCAACGTCACCTTCGACGTGCTGGTGGAGAA CTACACCGAGGCGACCCGTGGTCTGATCGAGGGCGGCGCCGATCTGATCCTGATCGAGACCATCTTCGATACGCTCAATGCCAAGGCGGCGATCTTCGCC GTGCAGGAAGTCTTCGAGCAGCTCGGCGTCGAATTGCCGATCATGATCTCCGGCACCATCACCGACGCCTCCGGCCGCACCCTCTCCGGGCAGACCACCG AGGCGTTCTGGAACTCGGTGCGCCACGCCAAGCCGATCTCCGTGGGCCTCAACTGCGCCCTCGGCGCCAAGGACCTGCGTCCGTACCTGGAAGAGCTCTC TGGCAAGGCCGAGACCCACGTCTCTGCCCACCCCAACGCCGGCCTGCCGAACGCCTTCGGCGAGTACGACGAAACACCGGCGGAGATGGCCGAGGTGGTC GAAGAGTTCGCCGCCTCGGGCTTCCTCAACATCGTCGGCGGTTGCTGCGGCACCACGCCTGCGCATATCCAGGCGATCGCCGAGGCCGTGGCCAAGTACC CGCCGCGCGCCATTCCGGACATCCCCAAGGCCTGTCGCCTGTCCGGCCTGGAACCCTTCACCATCGACCGCAACTCGCTGTTCATCAACGTCGGCGAGCG CACCAACATCACCGGTTCGGCCAAGTTCGCCCGGCTGATCCGTGAGGACAACTACACCGAGGCCCTGGAAGTCGCCCTGCAACAGGTCGAAGCCGGCGCC CAGGTGATCGACATCAACATGGACGAGGGCATGCTGGATTCACAGAAGGCCATGGTCACCTTCTTGAATCTGATCGCCGGCGAGCCGGACATCTCCCGCG TGCCAATCATGATCGACTCCTCCAAGTGGGAGGTGATCGAAGCCGGCCTCAAGTGCATCCAGGGCAAGGGCATCGTCAACTCGATCTCGATGAAGGAAGG TGTCGAGCAGTTCAAGCACCACGCCAAACTGTGCAAGCGCTATGGCGCTGCCGTGGTGGTGATGGCCTTCGACGAAGCCGGCCAGGCCGACACCGCCGCG CGCAAGCGCGAGATCTGCCAGCGCAGCTACGACATTCTGGTCGACGAAGTCGGCTTCCCACCGGAAGACATCATCTTCGACCCGAACATCTTCGCCATCG CCACCGGCATCGAGGAACACAACAACTACGCCGTGGACTTTATCGAAGCCTGCGCCTATATCCGCGACAACCTGCCCTACGCCCTGACCTCGGGCGGTGT GTCCAACGTGTCGTTCTCCTTCCGCGGCAACAACCCGGTGCGTGAGGCTATCCACTCGGTGTTCTTGTACTACGCGATCCAGAACGGCCTGACCATGGGC ATCGTCAACGCCGGCCAGCTGGAAATCTACGATGAAATCCCCCCAAAGCTGCGCGACGCGGTCGAGGATGTGGTGCTCAACCGCACCGCCAATGGCACAG ACGCGCTACTGGCCATCGCCGACGAATTCAAGGGCGACGGCAGCATCAAGGAAGCCGAAACCGAAGAGTGGCGCGGCTGGGATGTGGTTGAGCGCCTCAA GCACGCCCTGGTCAAGGGCATCACCACCAACATCGTCGAAGATACCGAGGAATGCCGTCAGCAGTGCGCGCGCCCCATCGAAGTCATCGAAGGCCCACTG ATGGCCGGAATGAACGTGGTAGGCGACCTGTTCGGTTCGGGCAAGATGTTCCTGCCCCAGGTGGTCAAATCCGCCCGGGTGATGAAGCAGGCCGTTGCCC ACCTGATCCCCTTTATCGAAGCCGAGAAAGGCGACAAGCCGGAAGCCAAGGGCAAGATCCTCATGGCCACGGTCAAGGGCGATGTCCATGACATCGGCAA GAACATCGTCGGCGTGGTGCTGGGCTGTAACGGCTACGACATCGTCGACCTCGGCGTGATGGTGCCGGCCGAGAAGATCCTGCAGACCGCCATCGCCGAG AAGTGCGACATTATTGGCCTATCCGGGCTGATCACCCCATCGCTGGATGAAATGGTCCACGTCGCCCGCGAGATGCAGCGCCAGGGTTTCAACCTGCCGT TGATGATCGGTGGCGCCACCACCTCGAAAGCCCACACCGCGGTGAAGATCGAGCCGAAATACCAGAACGATGCGGTGGTCTACGTCACCGATGCCTCGCG CGCGGTCGGCGTAGCCACCCAGCTGCTGTCCAAGGAACTGAAAGCCGACTTCGTCGAGAAGACCCGCCTGGACTACATCGAAGTGCGCGAGCGCACCGCC AACCGCAGCGCCCGCACCGAGCGTTTGAGCTACGCCGCCTCCGTCGCCAAGAAGCCGAAGTTCGACTGGGCCAGCTACCAGCCGCCGGTGCCGACCTTTA CCGGGACCAAGGTGCTGGAGGATATCGACCTCAAGGTTCTGGCCGAATTCATCGACTGGACGCCCTTCTTTATCTCCTGGGACCTGGCCGGCAAATACCC GCGTATCCTCACTGACGAAGTGGTCGGCGAAGCGGCGACCTCGCTGTTCAACGATGCCCAGGAAATGCTCGCCAAGCTGATCGATGAAAAACTCATCAGC GCCCGCGCCGTACTGGGCTTCTGGCCGGCCAACCAGGTGCAGGACGATGACCTGCAACTGTACGACGCCGACGGCCAGCCGCTGGCCAAGCTGCACCACC TGCGTCAGCAGACGATCAAGCCGGACGGCAAACCGAACTTCTCCCTGGCCGACTTCGTCGCACCCAAGAGCAGCGGCCTGACCGACTACGTCGGCGGCTT CATCACCACCGCCGGCATCGGCGCCGAAGAAGTGGCCAAGGCCTATCAGAACGCCGGCGACGACTACAACTCGATCATGGTCAAAGCCCTGGCCGACCGC CTCGCCGAGGCCTGCGCCGAATGGCTGCACCAACAGGTGCGCACGAACTACTGGGGCTATGACAAGGACGAAGCCCTGAGCAACGAGGAGCTGATCAAAG AGCAGTACAAAGGCATCCGCCCTGCCCCCGGCTACCCCGCCTGCCCGGACCACACCGAGAAAGGCACCCTGTTCGACCTGCTCGACCCGGCCGCTGAAGA AGGCAAGCCAGGCCGCAGCGGCGTATTCCTCACCGACCACTACGCCATGTTCCCCGCCGCCTCGGTCAGCGGCTGGTACTTCGCCCACCCACAGGCGCAG TACTTCGCGGTCGGCAAAATCGACAAGGACCAGGTCGACAGCTACACCAAGCGCAAGGGCCAGGACCTGGCGGTCAGCGAACGCTGGCTGGCGCCGAATC TGGGCTACGACAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTAAGCCCTGCCAAACGACAAGGCCCGCGCATGCGGGCCTTGTCGTTTCACTACGGGTTGAACGGGCCGCGGCGCAAAGGCATAGTCATTGACCGCGGC TCATCGCCGACAGGCAGGAAAAGGACTTACCGCGCGTGCGGTACAACGCCCCGATGTCGTTCCACGTCATTGGTTCTGGCGGCTCATGAATAATGTGAGC GCCCGAGCGTATCTTAAAAATTCGTATGCGCCCGTTACTTAACAAGGAGTGCTCCCTTGAGCGGCAGGAATCGCGGGCAATTGTCATACAACAAGCGGCA TATGGACGCTTCGCGCAAGTGGTGAGAAACGCCCTTCCAGCCCTGCCGTCATATGTAAATTAAATATCTTACATAACTAAATTTCGCCAACCGACGCGCC TTGGCAGAGGCTAACGGCAAATAACATAATCAAAGGAGTCATATTTATGAAAATTCATCGTATCAACCCGACAAAACGCTGGTCTGATATCACCGTATTC
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| Amino Acid Sequence |
>methionine synthase
MSLSDRSARLHALQQALQERILILDGGMGTMIQSYRLEEEDYRGARFADWPSDVKGNNDLLILSRPDVIGAIEKAYLDAGADILETNTFNATRVSQADYG MEELAYELNVEGARLARQVADAKTAETPERPRFVAGVLGPTSRTCSISPDVNNPGYRNVTFDVLVENYTEATRGLIEGGADLILIETIFDTLNAKAAIFA VQEVFEQLGVELPIMISGTITDASGRTLSGQTTEAFWNSVRHAKPISVGLNCALGAKDLRPYLEELSGKAETHVSAHPNAGLPNAFGEYDETPAEMAEVV EEFAASGFLNIVGGCCGTTPAHIQAIAEAVAKYPPRAIPDIPKACRLSGLEPFTIDRNSLFINVGERTNITGSAKFARLIREDNYTEALEVALQQVEAGA QVIDINMDEGMLDSQKAMVTFLNLIAGEPDISRVPIMIDSSKWEVIEAGLKCIQGKGIVNSISMKEGVEQFKHHAKLCKRYGAAVVVMAFDEAGQADTAA RKREICQRSYDILVDEVGFPPEDIIFDPNIFAIATGIEEHNNYAVDFIEACAYIRDNLPYALTSGGVSNVSFSFRGNNPVREAIHSVFLYYAIQNGLTMG IVNAGQLEIYDEIPPKLRDAVEDVVLNRTANGTDALLAIADEFKGDGSIKEAETEEWRGWDVVERLKHALVKGITTNIVEDTEECRQQCARPIEVIEGPL MAGMNVVGDLFGSGKMFLPQVVKSARVMKQAVAHLIPFIEAEKGDKPEAKGKILMATVKGDVHDIGKNIVGVVLGCNGYDIVDLGVMVPAEKILQTAIAE KCDIIGLSGLITPSLDEMVHVAREMQRQGFNLPLMIGGATTSKAHTAVKIEPKYQNDAVVYVTDASRAVGVATQLLSKELKADFVEKTRLDYIEVRERTA NRSARTERLSYAASVAKKPKFDWASYQPPVPTFTGTKVLEDIDLKVLAEFIDWTPFFISWDLAGKYPRILTDEVVGEAATSLFNDAQEMLAKLIDEKLIS ARAVLGFWPANQVQDDDLQLYDADGQPLAKLHHLRQQTIKPDGKPNFSLADFVAPKSSGLTDYVGGFITTAGIGAEEVAKAYQNAGDDYNSIMVKALADR LAEACAEWLHQQVRTNYWGYDKDEALSNEELIKEQYKGIRPAPGYPACPDHTEKGTLFDLLDPAAEEGKPGRSGVFLTDHYAMFPAASVSGWYFAHPQAQ YFAVGKIDKDQVDSYTKRKGQDLAVSERWLAPNLGYDN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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