Pseudomonas taeanensis MS-3, TMS3_RS0113210
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_03, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATCGGGCAACGCTTTCTGGAGGTCTGGTCAGGCCTGCCAGTGCTGTACCTGTTGATCATCCTCGCCAGTTTTGTGCAACCGAACTTCTGGTGGCTGCTG GGCATCATGCTGCTGTTTTCCTGGATGAGCCTGGTCGATGTGGTGCGTGCCGAATTCCTCCGCGGCCGCAATCTGGAATATGTCCGTGCCGCCCGCGCCC TGGGCATGCAGAACGGCGCCATCATGTTCAACCACATCTTGCCTAACGCCATGGTGTCGACCATGACCTTCATGCCATTCATCCTCACGGGCGCCATCGG CACCCTGACCGCGCTGGATTTTCTCGGCTTCGGCCTGCCGCCTGGCGCACCATCGCTGGGCGAACTGGTCGCCCAGGGTAAGTCCAACCTGCAAGCGCCA TGGCTGGGCATCAGTGCCTTTGCCGTACTGGCGATCATGTTGAGCCTGCTGGTGTTTATCGGCGAAGCGGCGCGTGATGCCTTCGACCCGAGGAAATAAG
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| DNA Sequence for Gene |
>TMS3_RS0113210
ATGACCGATTCCCCCCCCCTCATCGAAGTCCGTGACCTGGCTGTCGAGTTCGTCACCGGCGATTCAAAACAACGGGTGGTCGAAGCCGTCAGCTTCGATA TCTGCCGTGGTGAGACGCTAGCCCTGGTTGGCGAGAGCGGTTCCGGCAAATCAGTCACCGCGCACTCGATCCTGCGACTGCTGCCCTACCCGCTGGCCCA GCACCCCACGGGCAGCATTCATTACGCCGGAGAAGACCTGCTCAAGCTTGGTGAGAACAGGCTGCGTGGCATCCGTGGCAATCGCATTGCCATGGTCTTC CAGGAGCCGATGACTTCCCTTAACCCGTTGCACTGCATCGAGAAGCAGATCAACGAAGTGTTGGCGCTGCACAAGGGCCTGACAGGTAAAGCCGCCACAG TACGCACACTTGAGCTGCTGGACCTGGTCGGCATTCCCGAGCCACACAAACGCCTCAAGGCCTACCCGCATGAGCTGTCAGGCGGCCAACGCCAGCGGGT GATGATCGCCATGGCCCTGGCCAACGAACCCGAGCTGTTGATTGCCGATGAGCCAACCACCGCTCTGGATGTCACCGTCCAACTGAAGATTCTCGAATTA CTCAAAGAGCTACAAGCGCGCCTGGGTATGGCCCTGCTGCTGATCAGTCACGATCTCAACCTGGTTCGACGAATTGCTCATCGAGTATGTGTCATGCAAC GCGGACAGATCGTCGAACAAGCGTCGTGTGAATCATTGTTCCATGCACCGCAGCATCCCTATACCCAGGAACTGCTCGGTGCCGAGCCCAGCGGCTCGCC TGTGGCCAACCCGCCCGGTGAACCGATCCTGGAAGTCGACAACCTGCGCGTGTGGTTCCCGATCAAGAAAGGACTACTGCGCAAAACCGTCGATTATGTG AAAGCGGTGGATGGAATCAATTTCAGCCTGCCTCAGGGCCAAACCCTGGGCATCGTCGGCGAAAGCGGTTCCGGCAAGTCCACCCTCGGTTTGGCCATTC TTCGGCTGCTCGGCAGTCAGGGCGCCATTCGCTTTCGAGGCCAGGCCATGGACGGCTTGTCACAACAGGAGGTGCGCCCGCTGCGCCGGCAGATGCAGGT GGTATTTCAGGATCCATTCGGCAGCCTGAGCCCACGGATGTCGGTCGGCATGATTGTCGGCGAGGGCTTGCGCATACACCGCATGGGGACGGATGCAGAG CAGGAACAAGCGATTATCGACGCGCTTTTGGAGGTAGGTCTGGATCCGGAAACCCGGCATCGCTACCCTCACGAGTTTTCCGGTGGACAACGGCAGCGGA TTGCTATTGCCCGTGCACTGGTGCTGAAGCCGGCGCTGATACTGTTGGACGAGCCGACTTCTGCGCTCGACCGTACAGTTCAACGCCAAGTAGTCGAGCT GTTGCGAGCATTGCAGGCCAAGTACAACCTGAGCTACCTGTTCATCAGCCATGATTTGGCGGTGGTTCGAGCGATCAGCCACCATCTGATCGTGGTCAAG GAGGGTCAGGTGGTCGAACAAGGCCGTGCAGACACGATCTTCGCGGCACCTCAGCACATTTATACACAGCAGTTGCTGGAAGCCGCCTTCATGGCCCCAG CCACTGTCGACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCTTAACGCAGGAAGAGGAAGAACACACATGGGTTTTCTAAGCGGTAAGCGCGTACTGATCGTTGGCGTTGCCAGTAAACTGTCCATCGCCTCGGGTAT CGCCGCGGCCATGCACCGCGAAGGCGCTGAACTGGCCTTCACCTATCAGAATGAAAAACTCAAAGGGCGGGTCGAAGAGTTCGCTGCAGGCTGGGGTTCC AACCCTGAACTGTGCTTCCCTTGTGATGTGGCCAGCGATGAGGAAATCGTCTCGGTTTTCGAGGCCCTGAGCAAGAAATGGGACGGTCTGGACTGCATCG TCCACTCGGTTGGTTTCGCCCCAGGCGACCAGCTGAACGGCGACTTCACCGACGTCACCACCCGCGAAGGCTTCCGCATTGCTCATGACATCAGCGCCTA CAGCCTGGTAGCCCTGGCTAAAGCCGGTCGCGAGATGATGAAGGGCCGCAATGGCAGCCTGCTCACTCTGTCCTACCTGGGCGCCGAGCGGACCATGCCG
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| Amino Acid Sequence |
>microcin ABC transporter ATP-binding protein
MTDSPPLIEVRDLAVEFVTGDSKQRVVEAVSFDICRGETLALVGESGSGKSVTAHSILRLLPYPLAQHPTGSIHYAGEDLLKLGENRLRGIRGNRIAMVF QEPMTSLNPLHCIEKQINEVLALHKGLTGKAATVRTLELLDLVGIPEPHKRLKAYPHELSGGQRQRVMIAMALANEPELLIADEPTTALDVTVQLKILEL LKELQARLGMALLLISHDLNLVRRIAHRVCVMQRGQIVEQASCESLFHAPQHPYTQELLGAEPSGSPVANPPGEPILEVDNLRVWFPIKKGLLRKTVDYV KAVDGINFSLPQGQTLGIVGESGSGKSTLGLAILRLLGSQGAIRFRGQAMDGLSQQEVRPLRRQMQVVFQDPFGSLSPRMSVGMIVGEGLRIHRMGTDAE QEQAIIDALLEVGLDPETRHRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRALQAKYNLSYLFISHDLAVVRAISHHLIVVK EGQVVEQGRADTIFAAPQHIYTQQLLEAAFMAPATVD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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