Pseudomonas taeanensis MS-3, TMS3_RS0112395

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0015628 protein secretion by the type II secretion system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01709
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0009276 Gram-negative-bacterium-type cell wall
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01709
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015627 type II protein secretion system complex
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01709
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01709 JCVI: type II secretion system protein GspL IPR007812 Type II secretion system protein GspL 5 372 1.2E-71
Pfam PF05134 Type II secretion system (T2SS), protein L IPR024230 GspL, cytoplasmic actin-ATPase-like domain 37 217 3.9E-31
PIRSF PIRSF015761 Protein_L IPR007812 Type II secretion system protein GspL 11 379 4.2E-49
Pfam PF12693 GspL periplasmic domain IPR025691 GspL periplasmic domain 224 377 8.2E-36
Gene3D G3DSA:3.30.420.380 - - - 4 162 2.9E-25
SUPERFAMILY SSF53067 Actin-like ATPase domain IPR043129 ATPase, nucleotide binding domain 1 134 3.11E-21
Gene3D G3DSA:3.30.1360.100 General secretion pathway protein M, EpsM - - 291 378 4.3E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.