Pseudomonas taeanensis MS-3, TMS3_RS0112015 (fliA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_02, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGTGCTGATTGTCGATACCGCCGCCGGTATTGGCGATTCGGTGGTCAGCTTCGTCCGCGCCGCTCAGGAAGTATTGGTGGTGGTGTGTGATGAACCGA CCTCGATCACCGACGCCTATGCGTTGATCAAGTTGCTCAATCGCGACCATGGCATGAATCGTTTCCGTGTTTTGGCGAATATGGCCCACAGTCCGCAAGA AGGTCGCAACCTCTTCGCCAAGCTGACCAAAGTTACCGATCGCTTCCTCGACGTCGCGCTGCAATATGTCGGCGCCGTGCCGTATGACGAGATGGTGCGC AAGGCCGTGCAAAAACAGCGGGCGGTGTATGAGGCTTACCCACGCTCAAAATGCTCACTGGCGTTTAAAGCGATCGCTCAGAAAGTCGATGCCTGGCCGC TACCGGCCAACCCGCGCGGGCACCTGGAGTTCTTCGTCGAACGCCTGGTGCAGCAGCCGATTGCGGATACGGCGGTATGACAGCAGCCTCTGGAGTTCGG
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| DNA Sequence for Gene |
>TMS3_RS0112015
|fliA
ATGTACAGCAAAACGCAAGCGCAGGACTCCCAACACCAGTTGATCGAGCGTTACGCACCCTTGGTCAAACGTATTGCCTATCACCTGTTGGCCCGTTTGC CGGCCAACGTGCAGGTGGATGACCTGATCCAGGCCGGGATGATCGGTCTGCTCGAAGCCTCGAAGAAATACGACTCCAGTAAAGGCGCCAGCTTCGAGAC GTTCGCCGGTATTCGCATCCGCGGATCGATGCTCGATGAGGTGCGCAAGGGCGATTGGGCGCCGCGTTCGGTGCACCGCAACAGCCGCATGGTCAGCGAT GCGATTCGGGTAATTGAAGCAAGAACCGGCCGAGACGCTAAAGATCAGGAGGTTGCGGCCGAACTCCAATTGAGTCTTGATGATTACTACGGCATTCTTG GCGACACTTTAGGCAGCCGTTTGTTCAGTTTCGACGACCTGTTGCAGGACGGTGAACATGGCGAGCTGCGTGAGGACGCGAATAGCACTCACCTTGAGCC TTCACGTGATCTTGAAGATGAACGTTTCAAGTTGGCCTTGGCCGATGCCATCGCCCACCTGCCTGAGCGTGAGCGCCTGGTATTGGCGCTGTATTACGAC GAGGAACTGAATCTCAAGGAAATTGGTGAGGTGTTGGGGGTTAGCGAGTCGCGTATCTGCCAGCTGCACAGCCAGTGTGCCTCGCGCTTGCGAGCACGCC TGAGCGAATGGCGGACTAGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACAGATACAGATAGAGCCGGTTTCACGATTAGGGGCGTACTCAGGTGCTGGGTAGGTTTGGGACTGTACGGAGGTCGACTTGGACAAGAACATGAAAATC CTCATCGTTGATGATTTTTCAACGATGCGACGGATCATCAAGAACCTCCTGCGTGACTTGGGGTTCACCAACACTGCGGAGGCCGACGATGGCACCACGG CGTTGCCGATGCTGCAGAGCGGCAGTTTTGATTTTCTCGTGACCGACTGGAATATGCCGGGCATGACTGGAATCGATCTATTGCGTGCGGTGCGTGCGGA CGAGCGGTTGAAGCAGCTGCCTGTGTTGATGGTGACCGCGGAAGCTAAGCGCGACCAAATCATCGAGGCTGCGCAGGCCGGTGTGAATGGCTATGTGGTC AAGCCGTTCACCGCGCAAGTGCTAAAAGAAAAGATTGAGAAAATCTTCGAACGAGTCAACGGCTGATGTCTGCCGCGAGGGCGCTATGGAACACAATGAT
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| Amino Acid Sequence |
>flagellar biosynthesis sigma factor
MYSKTQAQDSQHQLIERYAPLVKRIAYHLLARLPANVQVDDLIQAGMIGLLEASKKYDSSKGASFETFAGIRIRGSMLDEVRKGDWAPRSVHRNSRMVSD AIRVIEARTGRDAKDQEVAAELQLSLDDYYGILGDTLGSRLFSFDDLLQDGEHGELREDANSTHLEPSRDLEDERFKLALADAIAHLPERERLVLALYYD EELNLKEIGEVLGVSESRICQLHSQCASRLRARLSEWRTS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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