Pseudomonas taeanensis MS-3, TMS3_RS0112000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_02, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCAGGTCATGCTGCTGGAGTCGCCGGCGCTGGCGCGGGCAGTGTTCTACTCGACGGAACTGGACCAGGAAATTCCGGCCGGTCTGTACCTCGCCGTCGC TCAAGTGTTGGCATACGTCTACCAGATCCGCCAGTACCAGGCCGGCAAAGGCAAGCGTCCGGCGCCACTGCCTGATCTGCCGATTCCATCGGATCTGCGT CGCGACGAGTAGGGTGGGGCGGGCCGCATAGGCTGAGCTGTGTTGGGTTAGCGGCGCCTGCTGAGGCCAAGCCCTTCGGGCGCCGCTTAATCCATCATGG CGTCAGCAGACCCGGCGTCGCGATGGGTTGCGCCGCGCCCAGGCAGCGGTCTTGATCGAATATTGACTCGGCGGCTAACCCATCCGGCGAGTGGCGCAGG CAAAGTTGGACAGCTTCTTGCAAATCCCACCGCAAAGGCGCGACAAGCGTCAAAAGTTTGAATCGGCTGGGGTAGGGATGTGGCAGTAGATCGCTCACAA
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| DNA Sequence for Gene |
>TMS3_RS0112000
ATGATCGGTAATGTACGCAGCAATCTCTCGGGATTGCGCCAGGGCAATCTGGGCATACCGTTGATGCTGCTGGTCATGCTCGGCATGGTCATGTTGCCGA TTCCGCCGTTCCTGCTCGACGTGCTGTTCACCTTCAGCATCGCGCTGTCGATCGTGGTGCTGTTGGTCAGTATCTATGCCTTGCGTCCACTGGATTTCGC GGTGTTCCCGACCATTCTGCTGGCGGCGACGCTGCTGCGTCTGGCGCTGAACGTGGCCTCGACCCGGGTGGTGCTGCTCAATGGCCATGACGGGCACGCT GCCGCCGGCCAGGTGATCCAGGCCTTCGGTGAGGTAGTGATCGGCGGCAACTACGTGGTCGGTATCGTGGTGTTCGCCATTTTGATGATCATCAACTTCG TGGTGGTCACCAAGGGTGCCGGACGGATTTCCGAGGTCAGCGCACGCTTCACCCTGGATGCCATGCCTGGCAAGCAGATGGCCATCGACGCCGATCTCAA CGCCGGTCTGATCGACCAGGTTGAGGCCAAGAAACGTCGCTCGGAAGTGTCCCAGGAGGCTGACTTTTATGGCTCGATGGACGGTGCCAGCAAGTTCGTC CGCGGCGATGCAATTGCCGGCCTGTTGATTCTGTTCATCAACCTGATCGGCGGCATCGCCATCGGTATCTTCCAGCACAACCTGAGCTTTGCCGACGCCG GCAAGGTGTACACCTTGTTGACCATCGGTGACGGCCTGGTCGCACAAATTCCCTCGCTGCTGCTGTCAACCGCTGCGGCAATCATGGTCACCCGGGTGTC CAGCTCGGAAGATATGGGCGCCCAGGTCAGTCGCCAGATGTTCGCCTCACCGCGTGCCTTGGCTGTGGCAGCGGCAATCATGATCGCCATGGGCCTGGTA CCAGGCATGCCACACTTTTCCTTTATCAGCCTTGGCCTGGTGGCTGCTGGCGCTGCCTACTGGATTGCCAACAAGCAACGCGTGGTCAAGGAGGAAGAGG TTCAGGAGGTGCAGCGCCAGCAGGAACTGCTACCGGCGCAGCGGGCTCAGGAGGTCAAGGAGCTCGGCTGGGATGACGTCACGCCGGTGGATATGGTCGG CCTGGAGGTCGGTTATCGTCTGATCCCGCTGGTCGACCGCAACCAGGGTGGACAGCTGCTCGCGCGGATCAAGGGAGTGCGCAAGAAGCTGTCCCAGGAG ATGGGCTTTCTGATGCCCTCGGTGCACATCCGCGACAACCTCGACCTGCAGCCGAATGCCTACCGGCTGACCCTGATGGGGGTCAGCGTGGCCGAGGCCG AAGTCTTTCCCGACCGCGAGTTGGCGATCAATCCGGGGCAGGTATTCGGCACCCTCAATGGTGTCGCCGCCAAGGATCCGGCGTTCGGTCTGGAGGCGGT GTGGATCGATCCGAATCAACGCGACCAGGCCCAGTCACTGGGCTACACCGTGGTCGATGCCAGTACGGTAGTCGCCACCCATCTCAATCAGATATTGCAC AAGCATGCCCATGAGCTGCTCGGTCATGAAGAGGTGCAGCAGTTGATGCAGCTGCTGGCCAAGAGCTCGCCCAAATTGGCTGAAGAGCTGGTGCCGGGGC TGGTGTCCTTGTCGGTGCTGCTCAAGGTGTTGCAGGCGCTGCTGCAGGAACAGGTGCCGGTACGTGACGTGCGCACCATCGCCGAGGCCATCGCCAACGT GGCACCAAAGAGTCAAGATCCTGCCGCCATGGTGGCGGCGGTACGAGTTGCGCTGGCTCGGGCAATCGTGCAAAGCATTGTGGGACTAGAGCCGGAGCTG CCTGTGATCACCCTTGAGCCAAGGTTGGAACAGATATTGCTCAGTAGTTTGCAGAAGGCTGGTCAGGGCTCCGAGGAAGGCATCCTCCTGGAGCCGGGCA TGGCCGAGAAGTTGCAACGTTCCCTGGTGGAAGCGGCGCAGCGTCAGGAAATGCTCGGCAAGCCAGTGATCCTGCTGGTGGCCGGTCCGGTCCGGGCCAT GCTCTCGCGGTTCGCACGGCTGGCAGTACCGAGTATTCACGTGCTGGCATACCAGGAAATTCCGGACAACAAACAGGTCACTATCGTTGCGACGGTAGGG CAGAACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGAGGTTACAGGCCATGCAGGTCAAACGCTTTTTCGCCGCCGATATGCGTCAAGCCATGAAGCTGGTCCGCGATGAGCTGGGCGCGGATGCCTCGATCA TCGGTAATCGTCGGGTTGCTGGTGGTGTCGAACTGACCGCCGCACTGGACTATCAGATTCCCGCTGCGCCCGCTCGCCAGGCCAATCCTGCGCTGGAAGC CGAACTGCGGACGACCCAGGCGCGCATCGCCTCGGCTCAGGCCGAGCTGGCCACGCGCGAGCAGGGCGATGCAGGTAAGGATCGCCAACTGTTTGGCGCC GAGCCGGATGCACCGACTGCTAGCCTGCCCGAGGCCCCGTATCAGCCGCGCTCCATGCCTGTTGCTGCCGCCGATCAGGGTGCCTTGGAAGCCATGCGTT TCGAACTGCATGGTCTGCGTGAGCTGATTGAAATGCAGATGGGCTCGATGGCCTGGGGTCAGCTGCAAAGCCGCCGCCCGGAACAGGCCACCCTGTGGCG
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| Amino Acid Sequence |
>flagellar biosynthesis protein FlhA
MIGNVRSNLSGLRQGNLGIPLMLLVMLGMVMLPIPPFLLDVLFTFSIALSIVVLLVSIYALRPLDFAVFPTILLAATLLRLALNVASTRVVLLNGHDGHA AAGQVIQAFGEVVIGGNYVVGIVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQVEAKKRRSEVSQEADFYGSMDGASKFV RGDAIAGLLILFINLIGGIAIGIFQHNLSFADAGKVYTLLTIGDGLVAQIPSLLLSTAAAIMVTRVSSSEDMGAQVSRQMFASPRALAVAAAIMIAMGLV PGMPHFSFISLGLVAAGAAYWIANKQRVVKEEEVQEVQRQQELLPAQRAQEVKELGWDDVTPVDMVGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQE MGFLMPSVHIRDNLDLQPNAYRLTLMGVSVAEAEVFPDRELAINPGQVFGTLNGVAAKDPAFGLEAVWIDPNQRDQAQSLGYTVVDASTVVATHLNQILH KHAHELLGHEEVQQLMQLLAKSSPKLAEELVPGLVSLSVLLKVLQALLQEQVPVRDVRTIAEAIANVAPKSQDPAAMVAAVRVALARAIVQSIVGLEPEL PVITLEPRLEQILLSSLQKAGQGSEEGILLEPGMAEKLQRSLVEAAQRQEMLGKPVILLVAGPVRAMLSRFARLAVPSIHVLAYQEIPDNKQVTIVATVG QN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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