Pseudomonas taeanensis MS-3, TMS3_RS0108805 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_02, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTTGATGCGCTGCCAGGATTCGCTGAGCACTGCGCCGATACTGAAGTCATAGCCGCGGCTCAGGGCATGTTCGATACTCGGCACCTGGCCGTCGGCTTG CACTTCTCGCAGGTTGCTAATGGGTGCTGCGTAAGGATTGGGGCTGATGGCGTCACTCATGGGGCGTCCTTGTACTGAGTGTTATGACGTTAAGTCGGAC ATGCTAGCGGTGCTGGCATTTGGCCCGCAAGGCGCTGTCAGTTGCTGGGCGTAGTGCTGTGCGCTGGGTCAAGGTTTGCAATGCGCCGAGAGGGCGAAGA ATCCGCCGGCTGGCAGATGCTAGCAGGCCGTTGAAAAACTACTGCGCTAGGCTATGCAGCGTTGAAATCGGCCTCAAAATGCTCATTTACAACACGTAAA CTGCGCTTTTTCGGCCGCTTTCGCCTTGCCTAACCGTCGCTCGCTACATTTTTCAACGGCCTGCTAGACTGCCTCGGCCTCCGGACTTAGGAAAAACGAC
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| DNA Sequence for Gene |
>TMS3_RS0108805
|sbcB
GTGACCTCCAGCCTGTTCTGGTACGACTACGAGACCACCGGTATCGACCCTCGCCGCGATCGCCCCGTGCAGGTCGCCGGGATTCGCACCGACGAAGACC TCAACGAAATCGCCGAGCCGCTGAATATCTACTGCCAGCCCAGTGACGATATCCTACCGCACCCGGCGGCTTGTCTGGTCACCGGTATCACGCCGAGCCA GCTGGCGCAGCATGGGTTGAGCGAAGCCGAATTCATGACCTGCATTCACGCCGAGTTGGTCCAACCAGGCACCTGCGGCGTGGGTTACAACAGTCTGCGA TTCGACGATGAAGTTACCCGTTACAGCTTCTATCGGAATTTCTTCGATCCCTATGCCCGCGAGTGGCAGGGTGGCAACAGTCGCTGGGATTTGATCGATC TGGTGCGTGCCGCCTATGCCCTGCGCCCGGAAGGGATCGTCTGGCCAGAGGAGGAGGGGCGTGTCAGCCTCAAGTTGGAACGGCTGACCGCGGCCAACGG CATCGACCACGGCCAGGCCCACGATGCCTTGTCCGATGTGCGTGCGACCATCGCCCTGGCCCGCTTGATCCGCAGCAAGCAGCCCAAGCTGTATGACTAC CTCTATCAATTGCGCAGCAAACAGCGGGTGCTCGATAAGATTCGCTTGCTGCAGCCTCTGGTGCATATTTCCGGGCGCTTCGCCGGTTCCCGACATTATT TGGCGCTGGTATTGCCACTGGCCTGGCACCCGCGCAATCGCAATGCCTTGATCGTCTGTGATTTACACGCCGATCCCACGCCGTTACTCGACGAAGATGC GCAGACCTTGCGCCAGCGGCTATATACCCGTCGCGAGCAACTCGCGGAAGGTGAGTTACCGGTGCCGTTGAAGTTGCTGCATATCAATCGGTGTCCGGTG GTGGCGCCTTTGAGTGTGTTGCGCAGCGAGGATATTCAACGCTTGCAGCTGGATATGACGGGCTATCAGACGCGCGCGAATAAACTCGCGGAGTCACAAG GGCTGTGGCAGGACAAACTCGCTCAGGTGTATGGCGAAGAGAGTTTCGCCCCCAACGATGATCCAGAGCAGCAGTTGTACGATGGTTTTATCGGTGATCG TGACCGGCGCTTATGCGAGCAGGTGCGTAGTGCCGAGCCACAACAATTGTCACAGGATGTCTGGCCGTTCGACGATGCTCGATTGCCTGAATTGTTATTT CGTTATCGCGCCCGTAATTTTTTCCCGAGCTTAAGCACAGAGGAACAACAGCGCTGGAGAACCTTTTGTCAGCAACGTTTAACGCTGCCTGAGTTCGGCG CGCCAAATACCTTGGCGAGTTTTGAGGCTGCGCTGGGAGAGCTGTTCGAGACTGCGACGGCCGATCAGCAGGCGCTATTGGCCGGGTGGCGCGAGTATGC ACAGCAGTTGCGTCAGCGTTATGCCATTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAACTTGAGCGAGTGCCAGATAGTCGAGCTATTGCCGCGGGAAAATGTTGTCTGGTATTGCCAGTCGGGCGGTTACTGTTTCGGGCAGTCGGTATTGAGT AGGCTGTACGGAAGGTAGACAGCCACGCATAAAAAACGCCAGCAATAGCTGGCGTTTTTTATGCGTTCAAACTGCAGTGCAGTCGCAGGGCTTAGTCCAG CAGGGTCACCCAGCTTTCCACGACGTCGGAGCCCCACTTGGCTTTCCACTCTTTCAGGGTCTTGTGGTTGCCACCCTTGGTTTCGATCACTTCACCGTTG TGCGGGTTCTTGTACTGCTTAACTTTACGTGCGCGCTTGGTGCCGGTGGTCTTAGCTGCGCGTGGAGCCTTGCTGGCTTTGGCGTCCGGGTCGAGCATGG CAATGATGTCGCGCAGGGACTTCTGATACTCACCCATCAGAGTGCGCAGCTTACCTTCGAATTCCAATTCTTTTTGCAGCTTGTCGTCTTGCGACATGCT
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| Amino Acid Sequence |
>exonuclease I
MTSSLFWYDYETTGIDPRRDRPVQVAGIRTDEDLNEIAEPLNIYCQPSDDILPHPAACLVTGITPSQLAQHGLSEAEFMTCIHAELVQPGTCGVGYNSLR FDDEVTRYSFYRNFFDPYAREWQGGNSRWDLIDLVRAAYALRPEGIVWPEEEGRVSLKLERLTAANGIDHGQAHDALSDVRATIALARLIRSKQPKLYDY LYQLRSKQRVLDKIRLLQPLVHISGRFAGSRHYLALVLPLAWHPRNRNALIVCDLHADPTPLLDEDAQTLRQRLYTRREQLAEGELPVPLKLLHINRCPV VAPLSVLRSEDIQRLQLDMTGYQTRANKLAESQGLWQDKLAQVYGEESFAPNDDPEQQLYDGFIGDRDRRLCEQVRSAEPQQLSQDVWPFDDARLPELLF RYRARNFFPSLSTEEQQRWRTFCQQRLTLPEFGAPNTLASFEAALGELFETATADQQALLAGWREYAQQLRQRYAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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