Pseudomonas taeanensis MS-3, TMS3_RS0105360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_01, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATGCCAGCAAGGTGCGTTCCGGGGGTAAGATGGGTTACTACTGGCAACTGTTCGCCGGCCTCGGCTGGACCAGCATCCACTGGTTACACAAGATCCGCC AACCGACTCTGGTGCTGGCCGGCGACGACGACCCGCTGATCCCGCTGATCAACATGCGTTTGCTGGCCTGGCGAATCCCCAATACCGAGCTGCACGTAAT CGACGATGGCCACCTGTTCCTGGTGACCCGTGCCGAAGCAGTGGCGCCCATCATCATGAAGTTCCTCGCCGAGGAGCGCCAGCCCGCGGTGATGCATCCG CAAACGTCGCCCTCTCGCAGTTATTGAGCCGCACCACTGTAGCGCCCGACCTGCATATTCGCCCTACTTTAGGGCAGGTTTAACTACTTGAAGTTCTGCA CAACACTGTCTGTAATGGACTGGCTGCGAGCCCTGGCATAAGCCTTGCTGCAGGCCCGTAGACCTTGAGTCTCAATGGTTTAACGACGGAGTGTTACCCA
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| DNA Sequence for Gene |
>TMS3_RS0105360
ATGCGAGACAAGCCACCTACTGGCTCTTTACCCGTCCCGGCCAACTTCATGAATGTCCAAAGCGCCATGGTCGGAATGCGCGGCCGCGATCTATTTTCCA CCGTACGCAGTCTGGCGCTGAATGGCCTCAAACACCCGCTGCTCAGCGCCCGCCATACCCTGGCCCTGGGCGGCCAGTTAGGCCGCGTACTGCTCGGCGA CACACTGCATAAGATTAATCCGCAGGACGCCCGCTTCGCCGACCCGACCTGGCAACTCAATCCATTTTACCGGCGCAGTCTGCAGGCCTACCTGGTCTGG CAAAAACAGCTGAACCTGTGGATCGACGAAAGCGATCTACCTGCCGACGATCTCGCCCGCGCGCGCTTTGTCTCGGCGTTGCTCAGCGACGCGCTGTCGC CCTCTAACAGCCCGCTCAATCCACTGGCGCTCAAAGAGCTGTTCAACAGCGGCGGCAGCAGCCTGTTCAAAGGTCTGGGCCAACTGTTCGACGACCTGCT GCACAACGATGGTTTGCCCAGGCAAGTCAGCAAACAGGCCTTCGAGGTCGGCCGCAATCTAGCCACCACACCCGGCGCAGTTGTATTTCGCAACGAGATG CTGGAGCTGATCCAGTACAGCCCGATGAGCGAAAAACAGTACGCCCGGCCCCTGTTGATCGTTCCACCGCAAATCAACAAGTTCTATATCTTCGACCTGG CTAGCGATAAGAGCTTCGTCCAGTACGCCCTGAAGAACGGCTTACAGACATTTATCATCAGCTGGCGCAACCCCGATGCGCGACATCGCGAGTGGGGCCT GTCGAGCTATGTGCAGGCCCTGGAAGAAGCCATGAACGCATGCCGCTCGATCACCAACAGCAAGGACGTCAACCTGCTGGGCGTCTGCGCCGGCGGCCTG ACCATCGCTGCCTTGCAAGGCTACCTGCAAGCCAAACGACAGCTGCGCAAAGTCGCCAGCGCAACCTACATGGTCAGCCTGCTGGACAGCCAGCTCGACA GTCCGGCCATGCTCTTCGCCGACGAAAAGACCCTGGAAACAGCCAAGCGCCGCTCTTATCAACGGGGCGTCCTGGACGGCCGCGACATGGCCAAGGTGTT CGCCTGGATGCGCCCGAATGACCTGATCTGGAATTACTGGGTCAATAACTACCTGCTCGGCAAACAACCGCCGGCCTTCGACATTCTCTACTGGAACAAC GACAACACCCGCCTGCCGGCTGCGCTGCATGGCGACCTGATCGATTTTTTCAAATACAACCCGCTGAACCATGCCGGCGGCCTGGAAGTCTGCGGCACCC CAATTGATCCGAAAAAAATCACCATAGACAGCTTCAGCGTGGCCGGTATCAACGACCACATCACCCCCTGGGACGCGGTGTACCGCTCGGCCCTGCTGCT CGGCGGCAACAAGCGTTTCATCCTGTCCAATAGCGGACATATCCAGAGCATCCTCAACCCGCCTGGCAATCCCAAAGCCAACTACTACGAATGCAACAAA CTCAGCTCAGACCCGCGCGCGTGGTACCACGACGCCAAACACGTGCAAGGCAGCTGGTGGCCGCAATGGCTGAGCTGGGCTCAAGAGCGCTCCGGCGAGC AGCGCGACACTTTGCCAGCCCTCGGCAGCGAGAAACACCCAGCGATGGAAGCGGCTCCCGGTACCTACGTGCATGTACGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGCCTGCACTCGCCCAATAACTGCCGGCCGCTTTCCGGCCAGTTACCTCCCTTTTTCCGTGGTCAGAATAAGCGCCCATGAAAACCCGCGAGCGTATCC TTGAATGTGCCCTGGCGCTGTTCAATCAGCAGGGCGAACCAAACGTCCCCACTCTGGAGATCGCCAACGAACTGGGGATCAGCCCTGGCAATCTGTACTA CCACTTCCACGGCAAGGAACCACTGATTCTCGGGCTGTTCGAACGCTTCCAGGCAGAACTGGCGCCGCTGCTCGACCCACCCGCCGATGCGCGTCTGGAT GCGGAAGACTACTGGCTGTTCCTGCACCTGATCGTCGAGCGTATGGCGCACTACCGCTTCCTGTTTCAGGACCTGTCCAACCTGGCTGGACGCTTGCCGA AGCTGGCACGTGGCATCAGCCATTGGCTGAATGCGCTGAAACGCACGCTGGCGTCATTGCTGGCCCGCTTGAAAGCGGAAAACCAGTTGGTCAGCGACAC
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MRDKPPTGSLPVPANFMNVQSAMVGMRGRDLFSTVRSLALNGLKHPLLSARHTLALGGQLGRVLLGDTLHKINPQDARFADPTWQLNPFYRRSLQAYLVW QKQLNLWIDESDLPADDLARARFVSALLSDALSPSNSPLNPLALKELFNSGGSSLFKGLGQLFDDLLHNDGLPRQVSKQAFEVGRNLATTPGAVVFRNEM LELIQYSPMSEKQYARPLLIVPPQINKFYIFDLASDKSFVQYALKNGLQTFIISWRNPDARHREWGLSSYVQALEEAMNACRSITNSKDVNLLGVCAGGL TIAALQGYLQAKRQLRKVASATYMVSLLDSQLDSPAMLFADEKTLETAKRRSYQRGVLDGRDMAKVFAWMRPNDLIWNYWVNNYLLGKQPPAFDILYWNN DNTRLPAALHGDLIDFFKYNPLNHAGGLEVCGTPIDPKKITIDSFSVAGINDHITPWDAVYRSALLLGGNKRFILSNSGHIQSILNPPGNPKANYYECNK LSSDPRAWYHDAKHVQGSWWPQWLSWAQERSGEQRDTLPALGSEKHPAMEAAPGTYVHVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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