Pseudomonas taeanensis MS-3, TMS3_RS0103360
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_01, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGTTTCGCCCCTCGGACGAGTTACTTCTTCTTTGCCCCGCATCGGCGTCCGGTGCAAAGAAGAAGTAACCAAAAAGAAAGCACACCCCAAATCCGGCCC TGGCTGCGCCAGGGTTCCCTCGCTCCATCGTCGTTCCAGGAGCACGCTGCGAAGGGCCATCCCTGGCCCATCGCAGCTCTCGGCTTTGGCATCCTGCGCC GCTCTACCTCTTGCATCCATGCCGCTCAACCCCTTACACGCCGATTGCGCTCGGCCTCCTGAGGGGCCCCAGTCTAGGCATCAACTCCTGCGCACAGCCC ATGATCGAGTCGGCACGTTATCTGCCGGGCGATAGCCTGACCCAAGTGTCAGGCGCAGACCGATCCCCTGTTTCGACAACAGCCCTCAACCACAGTCGAT TTTCCCAGTGCGCGGCAGATAAACCAGCCAAAACCAATCCGGCCAGCCTCACGGTATGCTTCTTGCTGCTTCCAACCACCCGAAGTAGCGGATGCCGTCG
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| DNA Sequence for Gene |
>TMS3_RS0103360
ATGTTGCATGCTCACCTGACCACCCTGCATGTCGTCTCGATGATTCTCGAGCTGTTCGCCGAGCGGCCCGAGTCGAGCGAGGTCTTGCTCGCCGGCAGCG GCATTCAGGCCAGCGACCTGGCCAGCGGCGAGCAGCGCATCACCCGCACCCAGGAATTGCAGGTGTGCGCCAATGCTCTGGCCCTGCGCGCCGACCTCGG CCTGGAGCTGGGCCGGCGCATGCACGTGTCCGCCTACGGCTTGCTCGGTTACGCCGCGCTGTCGAGTGCCACCTTTGGTGACGCCTGGCAGTTGCTGTTG CAGTACCCGGCCCTGCTCGGCACCTATTTCAAACTGGATCTGCAGGTCGAGGGCGAGCTGGCCTGGGTCAGTGCAGCCGAGTACCGGCATGCGTCGGCGC TGGAGCAGTTCAATGTGGAAATGTGCCTGGCCTCGCTGAAGCTGATCTGCGATGACCTGCTCGGCCAGCCCGTGCCGCTGGTCGCGGCGCAGTTCAGCCA CGCCCGGCCGGCCTATGCCAAGCGCTACACGGCCAGCTTCGCCTGCCCGTTGCAGTTCGACGCCGTGCGCAATGCCTTCGCCTTTCCCGCCGAGTGGCTG CAACGGCGCCTGCCGCTGGCCGACCCGGTCACCCATCAGGAGATGCTCGCCCGCTGCCGCAAGCTGAATGTCGAGTTCACCACCCGCCAGGCCTGGCTAC AGCGCGTGCGCGAGGCACTGACCAGCCACCTGGCCGAACCACCGGGGCTGGAGGCGCTGGCGCAGCAGATGCACTGCTCGCCACGCACCCTGCGCCGCCA CCTGCAGGAACTCGGCACCCATTATCAGGAGCTGCTCGACGAGCTGCGCTTCGAACGCGCGAAGACCCTGCTCGGCCAGGAGGACTGGCCGATCTGCCGG ATCGCCGAGGAGCTGGGCTTCAGTGAGAGCGCCAGCTTCCGCCATGCCTTCCAGCGCTGGAGCGGGGTCGCACCAAGCCGCTTTCGTGCGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTTGGGTTGAGCGCAGCACGTAGGGTTGGTTAGCCGTAGGCGTAACCCACCGCTTCTTTTGGCATCCATGGTGGGTTACGCCGCTGCGCGGCTAACCCAC CCTACGACCTGGAGCAGGGTCACGCCGAGTCTCTTTTGCGCGTAGGTTGGGTTGAGCGCAGCGATACCCAACAGCCCCTCTTGCGTGCACCTACTGCTGC CGTAACCGCCTGCTGCATGCACAAGGCTTACAGCGGCCAGTACATTTGGCCACTTCGATCCCCTATTGGCCGTTACCAGCGTTCCCCAGTCGGCCGACCC GGCGAACAATGGCTCTCACAGCACCGGCCACCACGGCATTGATCGCCATGGCAGTGGCCACCACGGCACTGGCCGCCATGGCACTGGCCACCACAACAAA AGCGCCTGGGAGACACCCGCACATGCTGACCTATTACAGCGACGACCATCACCTGCACCATGGCAGCTGCGAGCTGATGAACGGGCAACTGGTGCCCTGT
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| Amino Acid Sequence |
>AraC family transcriptional regulator
MLHAHLTTLHVVSMILELFAERPESSEVLLAGSGIQASDLASGEQRITRTQELQVCANALALRADLGLELGRRMHVSAYGLLGYAALSSATFGDAWQLLL QYPALLGTYFKLDLQVEGELAWVSAAEYRHASALEQFNVEMCLASLKLICDDLLGQPVPLVAAQFSHARPAYAKRYTASFACPLQFDAVRNAFAFPAEWL QRRLPLADPVTHQEMLARCRKLNVEFTTRQAWLQRVREALTSHLAEPPGLEALAQQMHCSPRTLRRHLQELGTHYQELLDELRFERAKTLLGQEDWPICR IAEELGFSESASFRHAFQRWSGVAPSRFRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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