Pseudomonas taeanensis MS-3, TMS3_RS0103130

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00052 duf2_2 IPR001633 EAL domain 701 947 4.4E-126
SMART SM00267 duf1_3 IPR000160 GGDEF domain 519 691 1.2E-58
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 529 689 1.5E-33
SMART SM00091 pas_2 IPR000014 PAS domain 280 347 11.0
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 702 958 4.7E-105
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 706 955 4.05E-93
CDD cd00130 PAS IPR000014 PAS domain 292 394 2.22036E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 272 393 3.6E-32
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 286 399 6.11E-16
Pfam PF13426 PAS domain IPR000014 PAS domain 416 517 8.3E-13
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 533 699 1.9E-51
Gene3D G3DSA:3.30.450.20 PAS domain - - 400 532 5.4E-31
SMART SM00086 pac_2 IPR001610 PAC motif 354 397 4.9E-8
CDD cd00130 PAS IPR000014 PAS domain 414 516 1.28313E-9
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 702 957 3.3E-98
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 277 403 7.5E-9
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 410 517 4.19E-24
Pfam PF08447 PAS fold IPR013655 PAS fold-3 307 390 3.2E-18
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 530 686 1.0E-44
Coils Coil Coil - - 695 715 -
CDD cd01948 EAL IPR001633 EAL domain 707 947 3.73562E-113
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 535 693 6.98E-45
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 383 953 0.0
Pfam PF00563 EAL domain IPR001633 EAL domain 708 942 2.2E-73
SMART SM00086 pac_2 IPR001610 PAC motif 477 519 0.002
Coils Coil Coil - - 222 256 -
CDD cd01949 GGDEF IPR000160 GGDEF domain 531 689 3.49899E-54
SMART SM00091 pas_2 IPR000014 PAS domain 405 471 2.8E-10
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 405 526 3.2E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.