Pseudomonas taeanensis MS-3, TMS3_RS0100670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taeanensis MS-3 contig_01, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTGACCCATGGTTCCAAGGTCAGCTCGTCCNNGTGCTTCAAGGAAGCGCTGGAACCAGGCTTCAAGGAGTACCAGGCGCAGGTGATCAAGAACGCCCA GGCCATGGCCAAGGTGTTCATCGATCGCGGTTTCGACGTGGTCTCCGGTGGTACCGATAACCACCTGTTCCTGGTCAGCCTGATCCGTCAGGGCCTGACC GGCAAAGACGCCGACGCCGCCCTCGGTCGTGCCGGTATCACGGTGAACAAGAACTCCGTACCGAATGACCCGCAGTCGCCGTTCGTCACCTCGGGCCTGC GCATCGGTACCCCGGCGATCACCACCCGCGGTTTCAAGGAGCAGCAGAGCATCGAGCTGGCTGGCTGGATCTGCGACATCCTCGATCACCTCGGCGATGC CGACGTCGAGGCGCAGGTCGCCACCCTGGCAGCCGGTCTGTGCGCGGATTATCCGGTTTACCGCTAAGGTCTTAGTCTTTCGTATCAGGAGTATCCACTG
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| DNA Sequence for Gene |
>TMS3_RS0100670
ATGCAACGTTATTCCGGCTTCGGCCTGTTCAAGCACTCGCTCAGCCACAACGAAAACTGGCAGCGCATGTGGCGCAACCCCAAGCCGAAGCCGGTATACG ACGTGATCATCGTCGGCGGTGGCGGCCACGGTCTGGCCACGGCCTACTACCTGGCCAAAGAATTCGGCGTGAAGAACGTCGCGGTGGTCGAGAAGGGTTG GCTGGGCGGCGGTAACACCGCGCGCAACACCACCATCGTACGTTCCAACTATCTGTGGGACGAGTCGGCCATGCTCTACGAGCACGCCATGAAGCTGTGG GAAGGCCTGTCGCAGGACATCAACTACAACGTGATGTTCTCCCAGCGCGGGGTGTTCAACCTCGGTCACACCCTGCAGGACATGCGCGACATCGAGCGCC GGGTGAGTGCCAACCGCCTCAACGGTATCGACGGCGAAGTGCTCAATGCCCAGCAGGTCTCAGACCTGATCCCGTTCATGGATTGCAGCAAGAACACCCG TTACCCGGTGATGGGCGCTTCCCTGCAGCGTCGCGGCGGCGTGGCCCGTCACGATGCCGTGGCCTGGGGCTATGCCCGCGCCGCCGACGCCCTGGGCGTC GACCTGATTCAGCAGACCGAAGTGACCGGCTTCCGCAAGGAAAACGGTGTGGTCATCGGTGTGGAAACCAACAAGGGCTTCATCGGCGGCAAGCGCGTCG GTGTGGTCACCGCCGGTAACTCCGGGCACATGGCTAAACTGGCCGGCTTCCGCATGCCGATCGAGTCGCATCCGCTGCAGGCGCTGGTATCCGAGCCGAT CAAGCCGATCATCGACAGCGTGATCATGTCCAACGCGGTACACGGCTATATCAGCCAGTCGGACAAGGGTGACCTGGTCATCGGTGCCGGTATCGACGGT TACGTCGGTTACGGCCAGCGCGGCTCCTACCCGACCATCGAGCACACCCTGCAGGCGATCGTCGAGCTGTTCCCGGTGCTCTCGCGCGTGCGCATGAACC GTCAGTGGGGCGGTATCGTCGACACCACGCCGGATGCTTGCCCGATCATCAGCAAGACCCCGGTGCAGAACCTGTTCTTCAACTGCGGTTGGGGTACCGG TGGCTTCAAGGCCACCCCGGGTTCCGGTCACGTATTCGCCGCCAGCCTGGCCAAAGGCGAAATGCATGAACTGGCTAAACCCTTCGCCATGGACCGTTTC TATAACGGTGCCCTGATCGACGAGCACGGCGCCGCCGGCGTCGCCCACTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGGAGAAATCCGACATGCTGAACATCTTCTGTCCCCATTGTGGCGAGCTGCGCTCCGAAGAGGAATTCCACTCGGCCGGCCAGGCGCACATCCCGCGCC CGCTGGACCCGAATGCCTGCACCGATGCGGAGTGGGGCGAGTACCTGTTCTTCCGCGACAACCCGCGCGGTATTCACCACGAGCTGTGGATTCACGCGGC CGGTTGCCGGCAGTACTTCAATGCCACGCGCGACACCATCAGCTACGAAATTTTCGAAACCTACAAGATTGGCGAAAAGCCGAGCGTGACCGCTAAGCCG AACAGTGCGAAGCAGCCCAGCCGTGCGGCAGGAGAAAAGGCATGAGTCAGATCAATCGCCTGAGCAAGGGTGGCCGGATCAACCGCAACCAGCCTTTGAC CTTCACCTTCAACGGTGAAAGCTATCAGGGTTTCAGCGGCGACACCCTGGCCGCCGCGTTGCTGGCCAACGGCGTCGACGTCGTCGGCCGCAGCTTCAAG
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| Amino Acid Sequence |
>sarcosine oxidase subunit beta
MQRYSGFGLFKHSLSHNENWQRMWRNPKPKPVYDVIIVGGGGHGLATAYYLAKEFGVKNVAVVEKGWLGGGNTARNTTIVRSNYLWDESAMLYEHAMKLW EGLSQDINYNVMFSQRGVFNLGHTLQDMRDIERRVSANRLNGIDGEVLNAQQVSDLIPFMDCSKNTRYPVMGASLQRRGGVARHDAVAWGYARAADALGV DLIQQTEVTGFRKENGVVIGVETNKGFIGGKRVGVVTAGNSGHMAKLAGFRMPIESHPLQALVSEPIKPIIDSVIMSNAVHGYISQSDKGDLVIGAGIDG YVGYGQRGSYPTIEHTLQAIVELFPVLSRVRMNRQWGGIVDTTPDACPIISKTPVQNLFFNCGWGTGGFKATPGSGHVFAASLAKGEMHELAKPFAMDRF YNGALIDEHGAAGVAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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