Pseudomonas pelagia CL-AP6, K787_RS0119040
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_31, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACAGGTGAAAATTAGCCGCAGTTGGTCGTCGGCTATGCTGTCTTCATTCAGCTCGTGGGTGGGAAGGTCTTCCAGCTCAAGCCGTTGCAGATGCTGGCT GGCCGTTTGGCGGCGACGAATCTGGTCTATCCCTTTGTGTCGTCCGGTACTGACCAGCCAGGCGCGCGGGTTGTCGGGCACGCCCTGGTCCGGCCATTGC TGCAGCGCCGCGGTGAAGGCTTCCTGCATGGCTTCTTCGGCCAGTTCGAAATCGCCCAGTAGCCGGATCAGAGTGGCGAGAACCCGTCGTGATTCGCGCT GATAAACGTTTTTGACTTGGGTGCTAACGGACATGGGAGTATCTGCAGCATGGTTGAATTACAAGCATTGTTTATGGTGATGTTTGCGCTGATGGTTACG CCGCATCTCGCCGCCGTCAAGCAGTTCTACGCGTGGCGTCACCTTTCATTCAGGTCCGAAATCCGCCAGCGTTTTTGTTGTGCGGAGGTAATATGAGCTT
|
|
| DNA Sequence for Gene |
>K787_RS0119040
ATGGATATTTCAGCGAACGACTGTTATCAAGCCGTTGTAGCGCGCGATGAACGTTATGACGGGCGATTCTTCACCTGTGTTACTAGCACAGGGATCTACT GCCGCCCGGTTTGCCCGGCGCGTACGCCGCGTTTTGCCAACTGCCGCTTTGTCGTCAGTGCGGCCGCGGCTCAGGACGCAGGGTTTCGGCCTTGTCTGCG CTGCCGTCCAGAAAGCTCGCCGTCCTCTGCCGCCTGGGCCGGTACATCAGCGGTGGTATCGCGTGCCTTGGCGCTGATTGAGGCGGGCGCACTGGATAAC GGCAGCCTGGAAGCGCTGGCCGAGCGGGTAGGGCTGGGCACAAGACAGCTGCGCAGGTTGTTTATCAAGCATCTGGGTGCAGCGCCGAGCAGTGTGGCGC AAACCCGTCGGCTGTTGCTGGCCAAGCAACTGATCCATCAAACGCGACTGCCGATGAGCGACGTCGCCCTGGGTAGCGGTTTTGCCAGCATACGACGTTT TAACGAAGCGTTCAGTCAGTTGTATGGGCGGCCGCCCAGTAGCTTGAGGGGAGTGAGGAGCAGCGTTGCCGAGCACGCCGACATAATCCTGTTGCTACCT TACCGGCCCCCGTATGACTGGGAAGCGATGCTGGATTTTCTCCAGCGCCGGGCGATTGCTGGGATGGAACAGGTGGTGGATGGGATCTATCAGCGCACCA TCCGCATCGGTGCGGATGTTGGCGTGGTCTGCGTGGAGCACGTGCCAGCGCGCCAGGCATTGCGGGTAAAAATTGGTTTTTCCCAGTTGCAGGCGTTGCC ATCGATCATTGACCGGTTGCGGCGCATGTTTGATCTCAAGGCGGATCCGGATGCGATCAGTCGGTTGTTATCGCGTGAACCGATGCTCGCACCACTGCTT GCGGCCCGGCCAGGGTTGCGTGTGGCAGGCGCCTGGGATGCGTTTGAAGTAGCGGTACGCGCGATATTAGGCCAGCAAGTGGCAGTAGCCGCCGGGGTTA CGCTGGTCAGTCGATTGGTCGCTCGGCTCGGGGAGCCTTTGGCCGCGCCGTCAGTGAGCGGGTTGACGCGCTATTTCCCCGAGCCCGAGGCTTTCGACCC AGAGGTGATTTTGACGCTCGGCATGCCAAGGTCGCGAGCGGCAGCTCTGGTAAATCTGGCGTGTGCTTGCCTGGCTGAACCGGGCCTGCTTGAGCGCCAA CGTGACTTGTCACACACGCTGACAAGGCTATGCGCCTTGCCAGGTATCGGCGAATGGACGGCAAATTATATAGCCATGCGCGCGATGCAGGAGAGTGACG CCTTTCTCGCTTCGGACGTGGCGTTACAGAGGGCCTTGGCCGGTGGCGGAGTGCGGCCTGATGCCAAGCAACTGCTCGCCCTGGCCGAACAATGGCGCCC CTGGCGAGCCTATGCAGTGATGCACCTGTGGGCTGCGGATGGTGTTAATGCCGGTGTTAATAGCGATCTGAATCGGACGCTAGAGGAGAACAAACATGCA ATTTCTGCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TACTGTTGAGACGCCTGTGGGGCAGCTGTTTCTGGTGACGGATGAGCAAGGGGCGCTGCGGGCGCTGGACTTTGAGGATTATCGCGCTCGGTTGGAGCGG CTACTCGACAAATATTACCGTCATTACCAGTTGGATCCGCTACCCGGCTCAGCACCCGAGCCGCTGATCCAGGCGCTGACCGCGTACTTTGCTGGCGATT TGGCTGCGCTGGAGAGCATTCCGGCCGAGACCGCTGGTACTGCCTTCCAGCGTTCGGTATGGCAGGCTCTGAGGGCTATTCCCGCGGGGCAAACGCGCAG CTACGGCCAATTAGCCGCAGCCATCGGCCATCCTTCCGCGAGTCGCGCTGTAGGGCTGGCCAACGGTTCCAATCCGGTGGCGTTGGTGGTGCCCTGTCAT CGGGTGATTGGCGCCAGTGGTAAATTGACCGGTTACGGCGGTGGTTTGTGGCGCAAGCATTGGTTGCTTGAACACGAGGCTCGGCACAGTGACGGCGGGG
|
|
| Amino Acid Sequence |
>AraC family transcriptional regulator
MDISANDCYQAVVARDERYDGRFFTCVTSTGIYCRPVCPARTPRFANCRFVVSAAAAQDAGFRPCLRCRPESSPSSAAWAGTSAVVSRALALIEAGALDN GSLEALAERVGLGTRQLRRLFIKHLGAAPSSVAQTRRLLLAKQLIHQTRLPMSDVALGSGFASIRRFNEAFSQLYGRPPSSLRGVRSSVAEHADIILLLP YRPPYDWEAMLDFLQRRAIAGMEQVVDGIYQRTIRIGADVGVVCVEHVPARQALRVKIGFSQLQALPSIIDRLRRMFDLKADPDAISRLLSREPMLAPLL AARPGLRVAGAWDAFEVAVRAILGQQVAVAAGVTLVSRLVARLGEPLAAPSVSGLTRYFPEPEAFDPEVILTLGMPRSRAAALVNLACACLAEPGLLERQ RDLSHTLTRLCALPGIGEWTANYIAMRAMQESDAFLASDVALQRALAGGGVRPDAKQLLALAEQWRPWRAYAVMHLWAADGVNAGVNSDLNRTLEENKHA ISA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|