Pseudomonas pelagia CL-AP6, K787_RS0116580
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGTTCGCTACACCTCGGAAAGCGCCCTGGAGGGTGGCAAAACTCACTGGCTGAGGCCCCGTTTAGTCGGCTATGCCGGCGTATTGGCGGTCATGATC GGGCTGTTTATCGTCGCCCTTGTAGAGCGCCCGCTGATGTCCATCGATGTCACCCGCGACCGCAACCTGTTTCGTCAGAATGGCGCGGGCCAAGTGGAAA ATGCGTACAGTTTGAAAGTCATCAACAAGCGCCAGCAGCCTGGACGCTATCAGATTAGCCTGGACGCGCCGGCAGGTTTTCGCCTGGTGTCACCAGATAT GCTCGACCTGGATGCCGAAGACATTCTCGACCTACCGGTCAGCGTGGTCTGGGACGGTGAGCAATGGCCTGACCCTAGAAAAGAGATAAGCTTCGTTCTG TCGGCTGTGGCTAACGATGCCAAGGCAGTCGTTACCGACTCCACCTTCCTGGCGCCAGTCAGACGCTAAAGGCTGTAGTACGCTAAATCGAGAAGTACCA
|
|
| DNA Sequence for Gene |
>K787_RS0116580
ATGAAACGCTATGAAAGACTGGCTGACGATATTGCCGAACTGATTCGCAACGGTATCCTTACTCCGGGTGAAAAGATTCCATCGATTCGCCATGCCAGCA AAACGTATGGCGTCAGCCCATCCACGGTGTTTCAAGCCTATTATTTGCTTGAGGATAGAGGCCTGATTCAGGCCCGTGCGCGCTCAGGCTATTTTGTTCG TGCCTTGGCAGGCCTACCCACACCGGAGCCCAGATTGGATCTCTCGGCTCAGGAGACCACGGATGTGGACGTCAGTGAGCTGGTGTTTTCCGTGCTCGGT TCGCTGAAGAATCCGCACACGGTACCCTTCGGCTCGGCTTTCCCCAGCCCTGACCTGTTTCCCCTAGCGCGCCTGGCGCGCTCGATGACGCAAAGCCTGC GCAAACTGTCGCCGCACGACATCATTGCCGACATGACCGCTGGCAACCCCGACCTGATGCGCCAGATTGCCCTGCGCTACATGGTCAGCGGCGTCATGCT GCCGATGGAAGAACTGGTTGTCACCAACGGCGCCCTTGAGGCACTCAACCTGTCACTGCAAAGCGTCACCCAGGCTGGCGACCTGGTTGCTATCGAATCA CCCGCCTTCTACGCCTGCCTGCAGGTGCTGGAGCGACTACAGCTCAAAGCGGTGGAGATTCCCGTACACCCGCGTGACGGGGTCGATCTGAAAACACTGC GTGAACGCCTGGCCAGCTTGCCGATCAAGGCCTGCTGGTTTATGAGCAGCCTTCAGAATCCCGTCGGCGCCAGCCTCAATGACAGCCGCAAACAGGAACT CTACAACCTGCTATGCGAGCATCAGGTACCGTTGATTGAAGACGACGTATACGCCGAACTCTACTACGGCGAACGGCCGCCCAAGCCGATCAAGAGTCTG GATACCCAAGGCCTGGTGATGCACTGCGGGTCCTTCTCCAAAAGCCTGGCACCCGGCTATCGCGTCGGCTGGGTTGCCGGTGGTCGCTACGCCGAACGTA TAGCGCGTCTCAAACTGATGACCACCCTCTCACCCTCAGTACCCGCGCAGACCGCCATCGCCGACTACCTGCAACACGGCAACTACGATCGCCATCTACG CAAACTGCGCTATGCCCTGGAAACCCAACAGGACGCCATGCTCGCCTCCGCAGCGCGACACTTTCCCCAAGGCACTCGCGTAACCCGCCCCTCAGGCGGC TACTTTCTCTGGTTTGAATTTCCAGGCAACGTCGATTCGCTACAGCTGTTCAAGCTCGCTCTGGCCCAGGGCATCAGCCTCGCACCCGGCCCCATCTTCT CCGCCAGCCAGGATTTTCGGCATTGTGCGCGGTTGAACTATGGGCATCCTTGGGGGGCAGAAAGTGAGCAGGCGATGGAGTTGTTGGGGCGGATGTTACG GTCTTTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TTATTAACGTAGTGCGTCTGAGGCAGGTCTTGACAGCAGTGGGATACTGAAAGAGTCGCCGCGATCACCGCCGCGGGTCCTACCAAACAGAGAGCAGGCG TCCCATGCGCAATGAAGAACTCAAGGCCTTGTTCGACCAACAGGCCGCCAACTACGACCAGCAATGGGCGGGTATGACACCCATTCGCGACTGTTTGCAT TTGCTGCTCGATGCTCTTTTCAGTGGCTTGCCGGAGAACGCCCGAATACTCTGCGTTGGCGCCGGCACCGGGGTGGAAATGGCCTACCTGGCTGGCCGCT TTCCCCACTGGCAGTTCACCGCCCTGGATCCCTCGGGCGCCATGCTCGATGTTTGCCGCCTGCGGGCGACACAAGACGGCTTCCTCTCGCGCTGCAGCTT CCACCAGGGCTATCTCGAGACCTTGGCCACCGAACCGCGCTACGATGGGGCTACCTGCTTGCTGGTCTCCCAGTTCCTCACCGACCCGTCAGCCCGCACC
|
|
| Amino Acid Sequence |
>GntR family transcriptional regulator
MKRYERLADDIAELIRNGILTPGEKIPSIRHASKTYGVSPSTVFQAYYLLEDRGLIQARARSGYFVRALAGLPTPEPRLDLSAQETTDVDVSELVFSVLG SLKNPHTVPFGSAFPSPDLFPLARLARSMTQSLRKLSPHDIIADMTAGNPDLMRQIALRYMVSGVMLPMEELVVTNGALEALNLSLQSVTQAGDLVAIES PAFYACLQVLERLQLKAVEIPVHPRDGVDLKTLRERLASLPIKACWFMSSLQNPVGASLNDSRKQELYNLLCEHQVPLIEDDVYAELYYGERPPKPIKSL DTQGLVMHCGSFSKSLAPGYRVGWVAGGRYAERIARLKLMTTLSPSVPAQTAIADYLQHGNYDRHLRKLRYALETQQDAMLASAARHFPQGTRVTRPSGG YFLWFEFPGNVDSLQLFKLALAQGISLAPGPIFSASQDFRHCARLNYGHPWGAESEQAMELLGRMLRSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|