Pseudomonas pelagia CL-AP6, K787_RS0112080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTCACACCTACCACCGGTGGCGCTCAGGAAGAAGTCGAGTTGCCCCTGAAGCTGATGGTGCTGGGTGATTTCACCCAGCGTCCCGATGACCGCAGTATC GAACAACGCAAGCCGATTGCCATCGACAAAGGCAACTTCGACGAGGTACTGGCCAAGCAGGAATTGAGTCTGGACTTCGTAGTAGCCAACCGGCTGCACA ACGACGAGAACGCTGACGACAGCCTCAACGTACACCTGAAGATCGACTCGATGAAAGATTTCAATCCCGCCAGCCTGGTCAGTCAGATACCTGAGCTGCA GAAGCTCATGGAGCTGCGCGATGCGCTGGTCGCCCTGAAAGGGCCCCTGGGTAACGCGCCGGCTTTTCGCAAGGCAATCGAAAGTGTGCTTAGCGACGAC GATTCCCGCGAGCGCGTACTCGCCGAACTGGGTCTCGACGCTCAAGACCAGCCCGAAGCCTGATCACCCAAACTGATCAACTGAACAAGGACGCTTACCC
|
|
| DNA Sequence for Gene |
>K787_RS0112080
ATGAGTACCCGTGCAGCAGCAAAAAGCGGCCAGCAGGCCGGAGCAGTCAGTATTCTCGACAGCATCATCGCTGAAACCCGTCTAACCCCCGATGACGAGG CCTACGGCATCGCCAAGCGCGGCGTATCGGCCTTTATCGAAGAACTGCTGAAACCGCAGAACGACAAGGAACCGGTCAAGAAAGCCATGGTCGATCGCAT GATCGCCGAGATCGACGCCAAACTCAGCCGGCAGATGGATGAAATCCTGCACCAACCCAGCTTCCAGGCGCTGGAGTCATCCTGGCGCGGCCTGCAGGTG CTGGTAGACCGGACCAATTTCCGCGAAAACATCAAGCTGGAGCTGATCAACGCCTCCAAGCAAGACCTGCTGGAAGATTTTGAGGACAGCCCCGAGATCG TTCAATCCGGTCTGTACAAACACGTTTACACCGCCGAATACGGGCAGTTTGGCGGCCAGCCGGTCGGCGCCCTGATCGCCAACTACTATTTCGATCCGAG CTCGCAGGATATGAAGACGCTGCAGCACGTGGCCAGTGTCGCCAGCATGTCCCATGCGCCCTTCATTGCGGCGGCCGGTCCCAAGTTCTTCGGCCTGGAA AGCTTCACCGGGTTACCTGATATCAAGGACCTGAAAGACCATTTTGACGGTCCGCAGTTCGCCAAATGGCAAGCCTTCCGCGAACAGGAAGACGCGCGCT ATGTAGGGCTGACGCTGCCGCGCTTCCTGCTGCGCAACCCCTATGATCCGGAAGACAACCCGGTCAAAAGCTTTGTGTACAAGGAAAACGTCTCCAACAA TCACGAAGACTATTTGTGGGGCAATACCGCTTTTACCTTCGCCACACGGCTGACCGACAGCTTCGCGAAATTCCGTTGGTGCCCGAATATCATCGGCCCA CAAAGCGGCGGCGCAGTGGAAGACCTACCCCTGCACCACTTTGAAAGCATGGGCGAAATCGAGACCAAGATTCCGACCGAAGTACTGGTCTCTGATCGCC GCGAGTACGAACTGGCCGACGAGGGCTTTATTGCCCTGACCATGCGCAAGGGCAGCGACAACGCCGCGTTTTTCTCGGCCAACTCCACGCAGAAAGCCAA GTTCTTCGGCAACAGTGAAGAAGGCAAAGCTGCCGAGCTGAACTACCGCCTGGGCACGCAACTGCCCTACCTGTTTATCGTCAACCGCCTGGCCCACTAC CTCAAGGTATTGCAGCGCGAACAAATCGGCTCCTGGAAAGAGCGCACCGATCTGGAGCTGGAGCTGAACAAGTGGATTCGTCAGTACGTGGCCGATCAGG ACAACCCGAATGCAGAAGTCCGCGGTCGTCGCCCGCTGCGCGCGGCGCAGATCACCGTCAGTGACATCGAAGGTCAGCCGGGCATGTATCGGGTAGGCCT CAGTGTGCGTCCGCATTTCAAGTACATGGGTGCGGACTTCACCCTGTCGCTGGTCGGCAAGATGGAGAAGGAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ACCATGGGGTACGGCAGCCTGTTTGAACGCCTGGCCGGCGAACCTGGAAAGCGCAGCAACCTGAGTGTGGATCAGGCGATTGTTGCCTCGATTGCCGCGC ATCTGGCGAAGATGCTCAGCACCCGCGCAGGCAGTGTCCAGGCGCTTCCGGATTACGGGCTGCCCGACCTCAACGACATGCGCCTGTCACTGCACGATTC GTTGCAGCAAGCCCGTGTCGCCATCGAGAGCTTTATCGAGAGCTATGAACCGCGCCTGTCCCAGGTCCGGGTCATTGCTCTGCCCCGGGAGCAAGACCCG CTGAACCTGTCGTTTGCGTTGGAAGGCATGGTCGACCTAGACGGGCAACGACGCCCGGTCAGCTTTACCGCGCGGCTCAACGGCAGCGGCCAGGTACAGG TTCAATAGGCAAGGCGAGCCCTTCACCTATTGGCAACACACTAAACACGACGCACACCCGATTACCGTAAATACCGCAAAAACCAGGGACTGGCTGAATG
|
|
| Amino Acid Sequence |
>type VI secretion protein
MSTRAAAKSGQQAGAVSILDSIIAETRLTPDDEAYGIAKRGVSAFIEELLKPQNDKEPVKKAMVDRMIAEIDAKLSRQMDEILHQPSFQALESSWRGLQV LVDRTNFRENIKLELINASKQDLLEDFEDSPEIVQSGLYKHVYTAEYGQFGGQPVGALIANYYFDPSSQDMKTLQHVASVASMSHAPFIAAAGPKFFGLE SFTGLPDIKDLKDHFDGPQFAKWQAFREQEDARYVGLTLPRFLLRNPYDPEDNPVKSFVYKENVSNNHEDYLWGNTAFTFATRLTDSFAKFRWCPNIIGP QSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELADEGFIALTMRKGSDNAAFFSANSTQKAKFFGNSEEGKAAELNYRLGTQLPYLFIVNRLAHY LKVLQREQIGSWKERTDLELELNKWIRQYVADQDNPNAEVRGRRPLRAAQITVSDIEGQPGMYRVGLSVRPHFKYMGADFTLSLVGKMEKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|