Pseudomonas pelagia CL-AP6, K787_RS0112040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas pelagia CL-AP6 111.KCCM90073.1_14, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGTTTGCTAAAGCAACAGGTTGGTAGCCTGCAACAGAGCCTGCGCAACCGCAATGAGCTGAAAAGCGAGATGAAGCTGGCGGTTACCAGCGTCGAGCAGG TCAGCAACAATCCGCTGAAGTTCAGCAGCGATAGCCGCCAGGCACTCGGCAGCCTACTGCGTCCGAGCGCTACCGATATGCCCGCCGAACAGGCGATCAA TCGGGCGTTTCGCGATCTGCAGGCACATCAGGTGGCGCTGATTGCCGCCAGTCGCGCAGCAATCAAAAGCATCCTCGAGCATTTGTCGCCAGACCAGCTG ACGCTGCGCTTCGAGCGCGAAAACAAATCACTGATGAATACCGCCGGCAGCCGCTGGCGCGCCTACACCCACCTGTATCAAGCGCTGCAGCGCGACGACA ACTGGAGTCAGCGTCTCTATGCGCGTGACTTTGTTGTCGCCTACGAAGAGCAGATACGCCTGATCGCCACCCTCAACACCGATCATCAAGGATGACCACC
DNA Sequence for Gene
>K787_RS0112040
ATGTGTAAAACGCTTTTCCTGGCCCTGACTGCCAGCCTGTTTGTACTGGTCGGCTGCTCGACCGTATCGCCCTATTCGGACCTGACCAAGCTTGATCTGA ACTTGGAGGGGAGCAGCCAGCTTAATCCAGACCTGAATGACCGGCCCTCGCCCATCGTGCTGCATCTGATGGAGCTCAAACACCCGGTGGCATTTGAAAA TGCCGATTTTTTCAGCCTGTACCAGCGCCCGCGCGAAGCCTTGTCGCCTGACTTGATCGCCATTGAAGAACTGGAGTTACGCCCCGGCGAACGACGTGAG TTGAAGCTGAGCGTGCAGGAAGGCAGCCGCTATGTAGCCGTTCTCGCCGCCTATCGCAATCTGCCCGACACCAACTGGCGTTTTATTATTCCTCTGCAAG AGAAAGGCCTGAACCAGATTAATCTGCGTCTGGACGCCGAAGGGATTCATGAGCTGGACAGCGCCACCAAGGACAGGAACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCATGATGATTCAAAAAGTCGTCTGGCAGGAGGGCATGTTGCTGCGCCCACAACACTTCCAGCAAAACGACCGCTACCACGATCACCAGTTGACCAGCC GCACCCGGCGCATGAGTCATTACGCCTGGGGTTTTTTCAACCTGGAGATCGATACCCAGTTTCTCAATATGGGCAAACTGGTGATCAGTCAGGCCAGCGG GCTGTTACCCGACGGCAGCTTTTTCGAGCTCGGTAACGAGCGTGAGGCGCTGGCCATGGATGTACCCGCCAACACCAGCAACAGCCCGGTTTATCTGGCC CTGCCGCTGGTAACCGGCAACCACGTGGAAACCCGCCGGCCTGAACAGCGTGATGTACTGGCGCGCTATACCGCGTTTGACAATCAGGTCGCCGACTCCA ATGCCGGGGATAGCAGCAGTAGTCAGGTCAGTTGCGGGCTTCCCGACTTCCGCTTGTTGCTTGGCGAGCAGCATAACGATCATGCCTACGTAAAGCTGAA
Amino Acid Sequence
>type VI secretion protein
MCKTLFLALTASLFVLVGCSTVSPYSDLTKLDLNLEGSSQLNPDLNDRPSPIVLHLMELKHPVAFENADFFSLYQRPREALSPDLIAIEELELRPGERRE LKLSVQEGSRYVAVLAAYRNLPDTNWRFIIPLQEKGLNQINLRLDAEGIHELDSATKDRN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site