Pseudomonas pelagia CL-AP6, K787_RS0112030
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAGCGGCCACGCCTGGATGGCCGTTACCAACACAACGATCTGGGCCAGAGCTTTCGCAAGCTGATGGACGCCATACGCCAGGTCCTGTCGATGGTCCTCG AACAGCACGCGGTGGAATTGGTACTGCAGCAACGTCAATACGGCATTCAAGTGTCGCCGTTGCAGGATCATACCTTGCTCGGCAGCGCCTCCTTCGTACT CGCTGCCAGCGCCGATTGCGACTCTGAAGAACTGCGCAAGCGCTTGCCGTCACATTTGAAAATCGGCCCGGTCGAACGCATTCGTCAGTTGGTCAACCTG CACCTGCCAGGCATCAAGGTCAAACCGCTGCCAGTCGCTCCACGGCAGATTCCGTTCCACTCGGGGAAAACCTACTTCGCGCTGGAACTGAGTGCTGAAG AGCTCTCCCAGTTGGAGCGTTCCGGAGGTTTTGCCTTCCATGTATCCGGTGAATTTACCGGCCTTGAGCTGAAATTCTGGGCTATCAGGAGCTGACCGTC
|
|
| DNA Sequence for Gene |
>K787_RS0112030
ATGATCAGGGAAATGGATTACAACCAGGATGATCATACGGTCATCGTCAATCGACAAGGTTCGGTACCGGCGCAGAGCCCGCTGACCGATTCCGCCGCCC CTCAGAAGTTCGACAAGCTGGAAGAGCGCATGGTTTATGCCGCGCGCCTGCGCCCGGCGGAAACGCTGAACCTGGGGATCAATCCGCTGGTCGCTGTGGC CTCGGCGCTGCTCTCGGAAATGGTGCGCCTGCAGCAAAACGTCGAACGCGAAGATCTGTTCGCGCTCAAGGATCGGCTCACTGCAGAAATCAAGCGCTTT GAGCATCGCGCCTTGCAAGATGGCGCAGAGAGCAGCCAGGTCATGGCCGCCCGTTACGTGCTCTGCACGGCCCTCGATGAGGCCGTGGTAACCACCCCGT GGGGCAATGAAAGCGAGTGGTCGCAGATGAGCCTGCTGAGCAGCTTCCATAACGAAACCTTTGGCGGCGAAAAATTCTTCCAACTGCTAGAGCGCCTGTC GCGCGACCCAGTCAAGCATCTGCCGATGCTGGAGCTGATGTATATCTGCATGTCGCTGGGCTTTGAGGGTAAGTACCGGGTGCTACCCCGCGGTATGCTC GAACTGGAAAGCCTGCGTGACAGCCTGTACCGCCAGATCCGCCAGCTTCGCGGCGACGTGCCGCGCGATATTTCGCCGCACTGGCAAGGTTTGACCGACA ACCGCAGACGTCTGATCCGTATCGTGCCCTTGTGGCTGGTCAGCCTGTTTACGCTGATATGCCTGGGCGTCATCTATGGCGTTTTCAACTGGATGCTCAC CGAACAGCGCGGCGCGGCCCTGCAGCCCTTTGTGATGGCTGAAATCCTGAGTCCAGAACCTGCACCGAATGCCACTGCTGTAAATGAATCAACTGACTCT TCAGGGATGAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TATGAAGTCCTTTTTCCTCAAATCCGGACGTTTTTTCCGGAAAAGCTGGGTATGGAGCCTGTGCCTGGTATTTGCCCTGGCCTTGCTGGTGTGGTTTGTC GGCCCCTTGCTAGCCGTCAGCGACAAACGTTTCTGGGCCTCCGCCAGCAGCCGCCTACTGACCATCAGCCTGATCTTCCTGATATGGGGACTCTCGATGG TCTACGCCAGTTGGCGCTCGAGCGTCGAGAACAAGCACAACGCCGAAGACGAAGACTACCAGGCGCGCCAGCAACGTCAGGAGCTGATACTCGAAGAGCA TGTGCAACTGACTGGCCGATTCAAGGATGCCATGCGCACGCTGCGTCGCTCCAGCCTCTATAGCGGACGTAGCGAACGCTGGCGCCGCGAATTGCCCTGG TATCTGGTACTCGGCCCGGAAGGGAGCGGCAAGACCAGCTTACTGGACTTTTCCGGCCTCGAGTTTCCGCTCAACAAAGGCGACAAGCAGCGTTTGACCC
|
|
| Amino Acid Sequence |
>OmpA family protein
MIREMDYNQDDHTVIVNRQGSVPAQSPLTDSAAPQKFDKLEERMVYAARLRPAETLNLGINPLVAVASALLSEMVRLQQNVEREDLFALKDRLTAEIKRF EHRALQDGAESSQVMAARYVLCTALDEAVVTTPWGNESEWSQMSLLSSFHNETFGGEKFFQLLERLSRDPVKHLPMLELMYICMSLGFEGKYRVLPRGML ELESLRDSLYRQIRQLRGDVPRDISPHWQGLTDNRRRLIRIVPLWLVSLFTLICLGVIYGVFNWMLTEQRGAALQPFVMAEILSPEPAPNATAVNESTDS SGMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|