Pseudomonas pelagia CL-AP6, K787_RS0111210
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAGTATCTTCAATACTGCTGAGCTGACCTTCAAGGCTTTGCAGCTCGGCCTGCTGCGCAGCGACCATAGCGGTCAAGCGGCTGTTGTACTCACTCAACTG TTCGCGTTGCTGCATCGCCTGGCGATAGCGCAACAGGGCTTCTCGGGTAGCGTCATCCAACTGCTCGATACGCTGTTGCGAGCCCTGCGCATCGCGCATC AGCGCCTCACTTTCACCCAGCGCCCGCTCAGTAACGTCCTGCGCCGATACAGCCGCTGGCAGCATGACCGCCAACAGTATCAAAACCGCTCTCATCCAGA CTCTCCGGAGTGTCCATGCCTGAATATCAGGCGATTCAAAAGAGAAGCATTATCATTTGAATCGCCTGATAGTTCAAGCCTTAATAGTGCTGCGGCAGAC TGCCGCAGCACTCCTGAGGGAATTCTTGCTTCAGATCAATAACCGCATTTAAAGCGAACACTAACATTGCACCATCATCACAAGCCCAGGAGCTAACACA
|
|
| DNA Sequence for Gene |
>K787_RS0111210
ATGTCACGTTCTACTATTCAACTGGCCGCAGGCCTTCTGCTCATACCTGCTTTACTGGCAACTTCGGTGGCCCATGCTCACCAGGCCGGTGACATCATTG TCCGTGCCGGCGCCATTACCGTTGATCCCCGCGAAGACAGCGGCGCCATCCAGCACGCCACACTCGGCAGCGTGGCAGGCTCCAAGGCGACTCTGGACAG CGACACCCAGCTTGGCCTCAACCTGATGTACATGCTGAGCCCGCAAATCGGTGTGGAACTGCTGGCAGCCTCCCCCTTCAGCCACAGCGTTGGTGTAAAG GGCATGCCTGGCGGCTTCTCAGGCCTTAACGGTAAACTCGGAGACATTAAACACCTGCCGCCAACCCTCAGCGCAGTCTGGTACCCAGTAACCAGTGAGA GCGTGTTCCAGCCCTACTTCGGTGCCGGTATCAACTACACTTGGTTTTTCGACGAGAGCGTGAGTAGCGAAGCCAAGGACAAAGGGTTTCAAGGCCTGAG TCTGGACAATTCCTGGGGGCTGGCGCTGCAGGCCGGTGCCGACATGATGCTGACCGACAAACTGATGCTCAATGCCCAGGTGCGCTATATCGATATCAGC ACCACAGGCCACACCAAGCTGGGCGGTGAAAAGGTGAAGGTCAATGTGGATGTCGACCCGATGGTCTACATGGTTGGTCTCGGCTACAAATTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCCGCCGCCACACAGCCAGAAACGGCCGCTTATGCGGCCGTTTTCATTTCCAATATTGCGTCAATTAAGCTGCCTGAGCAGATCGGGCAGTTGGCTTCGC CAAGCCCTTGGCTTGATACCGAAGGCCATTAGCAATCGACGTGACGCCAGCACCGCATTCTGCGGCTCCCAAACGCTATCCAACTGTTGATCGAATGGCA CCGAACGGATCGTGGGCACCTGCTCAAGCTGCTTGCTGGCCATCAACTCCTGCGCCAGACTTTTCACGAAACTTATCCAGCTGGACGCCTCACTACTGCC GTAATGATAGGTGCCATACAGCGGCGCGGCACAGTCCAGCTGCTTCAGGATTGCCAGCATCACTCGGGCAGCATCACCCACCGGGGTTGGATTACCTCGC CATTCTTCAGCCAACAGCAATGGTTCCCCGCTCCGCAGCTGCTCAAGCAGCCGGACCAACTGCCCATCAGGTGAGCCGTCAAGCACCCAGCCAAGACGTA
|
|
| Amino Acid Sequence |
>outer membrane protein W
MSRSTIQLAAGLLLIPALLATSVAHAHQAGDIIVRAGAITVDPREDSGAIQHATLGSVAGSKATLDSDTQLGLNLMYMLSPQIGVELLAASPFSHSVGVK GMPGGFSGLNGKLGDIKHLPPTLSAVWYPVTSESVFQPYFGAGINYTWFFDESVSSEAKDKGFQGLSLDNSWGLALQAGADMMLTDKLMLNAQVRYIDIS TTGHTKLGGEKVKVNVDVDPMVYMVGLGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|