Pseudomonas pelagia CL-AP6, K787_RS0109530
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGGAAGTGATGCTTAAGGTATTACACGGCTTGCGGCAGTTTGAAGGTAAAGCCAAGTTCAAGACTTGGCTTTACAGCATTACTTACAATGAATGTATAA CCCAGTACCGCAAAGAGAAGCGCAAGCGGCGTTTAATGGACGCATTAAGTCTGGACCAAGACGAGACCGAAGAAGTTGTAGATAGTTCCACCAATATTGT CGCTGATCGGCCCAGTCTTGATCGCTGGCTGGTGCATGTAAATCAGGTGGACCGCGAGATTCTAGTACTGCGCTTTGTGGCGGAGCTGGAGTTTCAAGAG ATAGCCGACATTATGCATATGGGTCTTAGCGCTACGAAAATGCGTTATAAGAGGGCGCTCGAGAAATTACGTAAAAGCATAGACAACCCCTTCTAGCGGA TTTTTTAAATACCTATGCTTGCATTTCAGGTTTTCTGTTATACTTACCCGGAGTTTTGCGCAAGTTAACGTCCTAATATGGATTTGATGGGGATTTACAG
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| DNA Sequence for Gene |
>K787_RS0109530
ATGAAATTGAAAAACACTTTGGGTATTGTTGTCGGTGCCGTTGTCGCTGCTTCTGCCTTGCCAGTCATGGCTCAGAGCGCCGGTTCCGTTGAAGTTGAAG CGTTTGCAGATCGCTACTTCACAGACAGCTACCGCGACATGAACGACGGTGCTCTGGTGGGTGGCGGTATTGGTTACTTCCTGACCGATGATGTGCTGCT GAACGTTAACCTGGGCAAATACACGAATCTTGAAGACGACGCCACTGGCGAAGACATCGACGGTCGCCTGATGGCTATCGAAGCTGTTTATCACTTTGGT CAGAGCAACATCCGTCCTTACGTTTCCGGCGGCTTCGGTCACCAGGAATTGGATCAGGTTGGCACCAGCCAGCGCGATCGTACCACCATGGCTATGGCCG GCGTTGGTATCAAGAACTACCTGAGCGATAACTTCTTTGTTAAAGCTGGCGTTGATGCGCTGTACGGCATCGATAGCAAGAACACCGAGTGGTCCGCTGG CGTTGGCCTGGGTCTGAACTTCGGTGGCGCTGCTGCCCCAGTTGCTCAAGCTGCTCCCGCACCGGCCCCTGCACCTGCTCCAGCTCCCCAGCCAGAGCCA GAAATGCAGTCAGTCCGTGTTGAGCTGGATGTCAAGTTCGATTTCGATCGTGACACCATCCGCCCTGAGTTCCGTCAGGACATTCAGAGCCTGGCCGAGT TCATGAAGACCTACCCTTCAGTAACTACTACTGTTGAAGGTCACACTGACTCCGTCGGCAGCGACAGCTACAACCAGAACCTGTCCGAGCGTCGTGCCAA TTCGGTACGTGAAGCTCTGATCAGCGAAGGTGTAGACTCCTCGCGCGTTAGCTCTGCCGGTTATGGCGAGTCTCGCCCGATCGCTGATAACGAGACTGAT AGTGGCCGTGCCATGAACCGTCGCGTTGAAGCTGAAGTAGAAGCTGAAGTAGAAGTTCGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAGCGACTGCTTAGCTTAAAAAACCCGGCTTCGGCCGGGTTTTTTATGTCTGCTATTCAGAAAATACGCTGTTATATCAGCTGCTGTGGATGTAATTCAC CCCGGGGAAGCGCAAGCGAAAATCGTCCGGCATGGGCGTCACCTTGGACGTGGTGAAGTCGTAAAAAACAAAGCCCGACTTGGCCAGCGCGACCAGCTCG CCACCGATTGCCTTGCTGATCCTGAAGATAATATCCCCGCCGTACTTGTTCAGATCCATCATACCTACCTCAAACACTAGGGCGTCCCGTGCGAAAGCCT CCCGCTTGTAGGTGGTGGCGAGATCGGTAACGATGATGCCTGTGTCCTTATCGCTGACTTCTTCGATACCGAATTGATACAGGAAGCGGGCGCGTGCTTC GGAGATCATCGAGACCATGGAATCATTGGCTAGATGTTTGCCCGCATTGATATCGGTAATTCGCACAGTAAGTTGGGTGGTGAAGTAAAACTGGTTTTCA
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| Amino Acid Sequence |
>porin
MKLKNTLGIVVGAVVAASALPVMAQSAGSVEVEAFADRYFTDSYRDMNDGALVGGGIGYFLTDDVLLNVNLGKYTNLEDDATGEDIDGRLMAIEAVYHFG QSNIRPYVSGGFGHQELDQVGTSQRDRTTMAMAGVGIKNYLSDNFFVKAGVDALYGIDSKNTEWSAGVGLGLNFGGAAAPVAQAAPAPAPAPAPAPQPEP EMQSVRVELDVKFDFDRDTIRPEFRQDIQSLAEFMKTYPSVTTTVEGHTDSVGSDSYNQNLSERRANSVREALISEGVDSSRVSSAGYGESRPIADNETD SGRAMNRRVEAEVEAEVEVR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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