Pseudomonas pelagia CL-AP6, K787_RS0108405

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008705 methionine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.10.196.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009086 methionine biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.10.196.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000381
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0031419 cobalamin binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF000381
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0044237 cellular metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.20.20.20
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0046872 metal ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02310
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0042558 pteridine-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00809
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF82282 Homocysteine S-methyltransferase IPR036589 Homocysteine-binding domain superfamily 2 395 3.01E-113
SUPERFAMILY SSF52242 Cobalamin (vitamin B12)-binding domain IPR036724 Cobalamin-binding domain superfamily 737 889 3.27E-45
Pfam PF02310 B12 binding domain IPR006158 Cobalamin (vitamin B12)-binding domain 743 836 6.5E-18
CDD cd00740 MeTr - - 352 608 4.52473E-125
PANTHER PTHR45833 METHIONINE SYNTHASE - - 2 1221 0.0
SUPERFAMILY SSF47644 Methionine synthase domain IPR036594 Methionine synthase domain 646 732 1.7E-27
FunFam G3DSA:3.20.20.330:FF:000001 Methionine synthase - - 1 334 0.0
Gene3D G3DSA:3.10.196.10 - IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily 901 1221 0.0
FunFam G3DSA:1.10.1240.10:FF:000001 Methionine synthase - - 640 734 2.7E-44
SMART SM01018 B12_binding_2_2 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain 651 734 7.5E-42
Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain IPR004223 Vitamin B12-dependent methionine synthase, activation domain 934 1205 6.7E-125
Gene3D G3DSA:3.40.50.280 - - - 739 891 1.5E-58
SUPERFAMILY SSF51717 Dihydropteroate synthetase-like IPR011005 Dihydropteroate synthase-like 352 625 1.24E-89
FunFam G3DSA:3.40.50.280:FF:000001 Methionine synthase - - 739 891 1.7E-77
Gene3D G3DSA:3.20.20.330 - IPR036589 Homocysteine-binding domain superfamily 1 334 3.0E-121
SUPERFAMILY SSF56507 Methionine synthase activation domain-like IPR037010 Vitamin B12-dependent methionine synthase, activation domain superfamily 898 1222 1.44E-128
Gene3D G3DSA:1.10.288.10 - - - 933 1090 0.0
Gene3D G3DSA:1.10.1240.10 Methionine synthase domain IPR036594 Methionine synthase domain 639 732 3.2E-37
Pfam PF02574 Homocysteine S-methyltransferase IPR003726 Homocysteine-binding domain 13 321 2.6E-76
NCBIfam TIGR02082 JCVI: methionine synthase IPR011822 Cobalamin-dependent methionine synthase 9 1189 0.0
CDD cd02069 methionine_synthase_B12_BD IPR033706 Methionine synthase, B12-binding domain 653 867 9.02452E-128
Pfam PF02607 B12 binding domain IPR003759 Cobalamin (vitamin B12)-binding module, cap domain 654 726 1.1E-24
PIRSF PIRSF000381 Met_synth_MetH IPR011822 Cobalamin-dependent methionine synthase 1 1192 0.0
Gene3D G3DSA:3.20.20.20 - IPR011005 Dihydropteroate synthase-like 342 638 0.0
FunFam G3DSA:3.20.20.20:FF:000002 Methionine synthase - - 342 638 0.0
Pfam PF00809 Pterin binding enzyme IPR000489 Pterin-binding domain 356 594 2.0E-57

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.