Pseudomonas pelagia CL-AP6, K787_RS0108080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCCACCAACAACCAGTCGCAGGGCGGCATACTGGCAACATCCTTGTAGGCCTGCACCGGGTTCAGCGTCATGCTGCCGTGCACCATACTGTCTACCGTA ATGCCGTTCTTGACCACGGCGTCATATTCGCTGCGCAACAGAAAATGCACATCATGACCGGCCCGTGCCAGCATCAGTCCGTAGAAGCCACCAATAGCTC CGGTTCCGATAACGCCTATACGCGGTTTTGCCTGCTGCATGAGAACCTCTTTACTCGCATGGATTGTTTCACACTGGGTGTCTGAAACTGTTCTGTGACG CCTATGGTAATCGGCACGCCCACGCCGAGACAGTCAGCCACGCGACAAAGCCGCCCAGAATCAAATTTTCCTGCTAATTGAGGCGTTTAATCGACCCAAT ACAGCATCCCGGGCTAGCCTCGTTGAGCATCCTTGATTAAGCTGTCTGCACTTATTAAAGGCAGCCCGATTGACTGCCTACTGACTTGCCGGGATAGATG
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| DNA Sequence for Gene |
>K787_RS0108080
ATGGCCGACTTACCTATTAATGATCTCAACGTCGCCTCCAATGAGGTACTGATTACACCTGCCCAACTCAAGGCCAAGATCCCCATTAGTGAGGCCTCGG AAACTACTGTGGTGCAAAGCCGCCAAGTGATCCGTGACATCCTGGATGGCCGCGACCACCGCGTGTTTATTGTTATTGGCCCCTGCTCCATCCATGACCT GGAGGCTGCCAAAGATTATGCGGCACGCCTGAAAAAGCTCGCAGACGAAGTCGGTGATACGCTGTATCTGGTCATGCGCGTGTATTTTGAAAAGCCGCGC ACCACAGTAGGCTGGAAAGGTCTGATCAACGATCCCTACCTGGACGATTCTTTCAAGGTTGCAGATGGCCTGCACATAGGTCGCCAATTGCTCAGCGACC TTACTGCGATGGGCTTGCCGACCGCAACCGAAGCTCTGGACCCCATTTCCCCCCAGTACTTGCAGGACCTGATTTCCTGGTCTGCCATTGGTGCGCGCAC TACCGAGTCGCAAACCCATCGCGAGATGTCCTCCGGCCTGTCTTCGGCGGTTGGCTTCAAGAATGGTACCGACGGCAGCCTGACGGTGGCCATCAATGCG CTGCAGTCGGTTTCCAGCCCGCACCGTTTCCTGGGTATCAATCAGGATGGTCAGGTATCGATCGTCACCACCAAGGGCAACCAGTACGGCCATGTGGTGC TGCGCGGCGGTAACGGCAAACCCAATTATGATTCGGTCAGTGTTTCCCTTTGCGAAAAGGAGCTGGCGAAAGCGGGCATCGCGCCGAACATCATGGTCGA TTGCAGCCACGCCAATTCCAACAAGGATCCCGGCTTGCAGCCGCTGGTCATGGATAACGTGGCCAACCAGATTCTGGAAGGCAACAACTCGATTATCGGC CTGATGGTAGAAAGCCATATTGGGTGGGGCAGCCAGTCCATTCCCAAGGATCTGTCGCAACTAAAGTACGGCGTCTCGGTTACCGATGCCTGTATTGACT GGGACACCACGGTGGAAAGCGTGCGCAGCATGCACGCCAAACTGAAAGATGTACTGCCGCGCCGCCAGCGCAATATAAGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCAGGACGCTGGACGGAAGGCTTCGATCACGGCCGGATTGCATTCCAGATACGGCCCGCCCATCAAATCTATGCAGTAGGGAACGGCGGGAAACACCGCG TCCAGACACTGGCGTATGGCTCTGGGCTTGCCCGGCAAGTTGATAATCAAACTGCTGCCGCGCAACCCGGCGGTCTGCCGGGAAAGAATGGCGGTGGGTA CATATTTCAGAGATTCGGCGCGCATCAATTCACCGAACCCGGGCATCATGCGGTCACAGACCGCTTCAGTGGCTTCCGGCGTGATATCACGCTCAGCCGG GCCCGTGCCGCCGGTGGTGACAACGAGGCAACAATCCTCTTCATCGACCAGATGCTCAAGCGCCTGCTCGATCTGCCGCGCCTCATCTGGAACCAGACGG TAGACCGGCTCCCACGCACTGCTCAAATAGTCGCTCAGGGTGTCAATAATCGCCTTGCCCGAGATATCCTGATAGACGCCAGCGCTGGCGCGATCACTGA
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| Amino Acid Sequence |
>phospho-2-dehydro-3-deoxyheptonate aldolase
MADLPINDLNVASNEVLITPAQLKAKIPISEASETTVVQSRQVIRDILDGRDHRVFIVIGPCSIHDLEAAKDYAARLKKLADEVGDTLYLVMRVYFEKPR TTVGWKGLINDPYLDDSFKVADGLHIGRQLLSDLTAMGLPTATEALDPISPQYLQDLISWSAIGARTTESQTHREMSSGLSSAVGFKNGTDGSLTVAINA LQSVSSPHRFLGINQDGQVSIVTTKGNQYGHVVLRGGNGKPNYDSVSVSLCEKELAKAGIAPNIMVDCSHANSNKDPGLQPLVMDNVANQILEGNNSIIG LMVESHIGWGSQSIPKDLSQLKYGVSVTDACIDWDTTVESVRSMHAKLKDVLPRRQRNIS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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