Pseudomonas pelagia CL-AP6, K787_RS0108055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCAATGCAATGCTTTTAGCCGCCTGGCTGGTCGCCATGGCCTTGCCAAATATGGCGCCACACAGAAATAGCAGGAAGAAGCGGCCGGCGAAGCTGAAGG CTCCCAACGAGCCGGAGGGGTAATATTCCAGCAACGTGCGGGGAATCAGCAGACCATTGGTTAGCGCTACCACCAATGAGCAGACCAGGGATGCGATAAA AATATTGATGCCTCGCATGGCCATGTAAATCAGCAGGGCCAACCCCGCCAGCAATCCCAGATTACCCAGCATCGCGTATTTTCCTTATAGTTATTGATTT CAACTGGGTCACAATACCTCAGCAGCGAGACAATACAATAAGCAACCGGTTCGTTCTATATGCTGAATACCCCATGATTTATGATCCACATCAATTCCGC ACTCGGCGGAAAATGCTAAGCTTTCTATGCTGGGTGACCGGCATATACACGAATTGACGAGACGAATTGGCGAATAGAGATTTGCAAATAGGGGATCGAC
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| DNA Sequence for Gene |
>K787_RS0108055
ATGAAAAACGTTTTGACTGTATCGACCGTTGCATTGGCGGCCTTGCTGGCTGCTGGTTGCAGCAACACCCAATATCAGCAAGAAACCACTAGCAGGCTCT CAGCGACAGAAACGGCAACGGCACGCGCTCAGGCCCGAGCAGATGAAGCCTATCGTAAAGCCGAGGAAGCCATGGCAGCAGCCCAGCGCGCCCAACAGGC CGCGGATGAAGCCAACGAGCGAGCCATGCGCATGCTGGAACAAACTAGCCGCAAGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTATTGCTCTGTTGTGCGAGCAGATGATGCCGGTCTATTCGGGCCGGCGTTATCTGCCATCGCCTACCTCTGCCCTATCGCAGTGGGCATGCCACTTTCC TCGAAAACGGCATCACGAATACGGTTCCAGTCCAAACGCAGATCGATAAAGCGCTCCGCCTCTTCTGCCAGCAATTGCTGGACAGCAGCCTGACGATCTA TGGTTGATGGCATGCCGTGCTCATCCAGCGGCGTGTGAACCTCGATTAGCAGCTCGTCATTGCGCAACCCAAGCTTGTAAGGCTGGTTGACTATGCGCAC CGGCGTACCGATCGGGATTAACGGAAAAAGCGCGGCGACATCCTCATTACGCATGCGAAAACAGCCGTGACTCACACGCATGCCAATACCAAATTTCTTA TTGGTGCCGTGAATCACATAGGCGCCCATCGCCAGATTCATTTTAAACGGCCCCATTGGGTTGTCCGGCCCTGGCGGCACCACTGTAGGCAAAAAATCAC
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| Amino Acid Sequence |
>Major outer membrane lipoprotein
MKNVLTVSTVALAALLAAGCSNTQYQQETTSRLSATETATARAQARADEAYRKAEEAMAAAQRAQQAADEANERAMRMLEQTSRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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