Pseudomonas pelagia CL-AP6, K787_RS0107160
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCCTACCAGGGGCAACTGGACTTCGTCGATAACCAATACAACCCCCGCACCGGCACCCTGCAATACCGCGCGCAGGTGGCCAATCCAGACGGCGCCCTG CGCCCTGGTCAGTTTGCCCGGGTAGAAATGCCGGTGGCGGCAGCCAGTGCCGCGCTGCTGGTCGACCAAAAAGCACTGATGACCGATCAGGATCGCCGTT ACCTGTATGTGCTGGATGACGATAACCGCGCCGAACGGCGTATTGTCGAAACCGGCCGCCGGGTGGATGGCTTGCTGGTGATCACTGAAGGGCTGGTCCC CGGGGAGCGCGTGGTGGTCAACGGTCTGCAGAAAATCGCTTTCCCTGGTATTGAAGTGCTGCCGCAGCAGGTAAATATGCGTCGCGGTCCAGCACCATTG GTCGTCGCGATAGCACCTTGAGGCAATAACGCTCCTTTTACTTTCTTTTATTCCACTGATACGGGCGCGTCTTTCGGGCGTGTTCCGGGAGGCTGTTGCC
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| DNA Sequence for Gene |
>K787_RS0107160
GTGAATTTTTCGCGTTTCTTCGTAGACAGGCCGATCTTTGCCTCGGTGCTGTCGATCATCATCTTTGTGGTCGGGCTGATCAGCATTCCGTTGCTGCCGG TCAGCGAGTATCCCGAGGTGGTACCGCCCAGTGTGCTGGTCAGCGCCAGTTATCCGGGCGCCAACCCCAAGACCATTTCCGAGACTGTGGCCACGCCGCT CGAGGAAGCCATTAACGGCGTCGAGGACATGATCTACATGAAGTCGGTCGCCGGCAGTGACGGCAGTCTGGCGCTGACGGTGACGTTCGCGCTGGGTACC GATCCGGATCAGGCCCAGGTGCAGGTGCAGAACCGCGTATCTCAGGCGCTGCCGCGCCTGCCCGAGGATGTACGCCAGCTCGGCGTGACCACCCAGAAGC AATCACCCAATCTGATGATGGCGGTGCATTTGACCTCGCCGGACGACAGTCTGGACGCCACCTATATACGTAACTATGCGGTCCTGCATATTCGTGACGA GCTGGCGCGGATTCCCGGTGTGGGTCAGGCCGGCCTGTTTGGCGCCGGTGACTACGCGATGCGCCTGTGGATCGACCCGCAGCGTGCCGCCGCGCTGGGT ATTACTGCAGGCGATATCAGTGCCGCAGTGCGTGAGCAGAATATTCAGGTCTCGGCTGGACAGATTGGTGCGCCGCCGATGCCGAATGGTTCCGATATGC TGATTTCGATCAACGCCCAGGGCCGCCTGGAAACCGTCGAGGAGTTTGAGAATATCGTGCTGAAGACCGGGGGCCAGGGCGAAGTGACCTTGCTCAAGGA TGTAGCCCGTATCGAGCTAGCCTCATCACAGGATGCACTGCGGGCGCTGCTGAATGGCCGTCAGGCGGTGGCACTGCCGATCTTTCAGGCGCCAGGGTCC AATTCCCTGGATGTGTCGGCGGCGGTACGCGAGAAGATGGCCGAGCTGCAGGCGGACTTCCCTGAAGGCTTGAGCTGGGAAGTGGCGTACGACCCAACCG TATTTGTCAGTACCTCGATCAAGGCGGTGATCATTACCTTGCTCGAAGCCGTTGCGCTGGTGGTATTGGTGGTGATCCTGTTCCTGCAGACCTGGCGCGC TTCGCTGATTCCGTTACTGGCGGTGCCGGTCTCGATTGTCGGTACTTTTGCGGTGCTGCTGCTGATGGGTTTTTCCATCAATACTCTGACGTTGTTCGCC ATGGTACTGGCCATCGGTATCGTGGTGGACGATGCCATCGTGGTGGTGGAAAACGTCGAGCGCAATATCGAGGCCGGCCTGGCACCGCTGGCTGCAGCGC ATCAGGCTATGCGCGAAGTAAGTGGGCCGATCGTGGCGATCAGCCTGGTGCTCTGCGCAGTGTTTGTGCCCATGGCCTTTCTGGACGGTATCACCGGTCA GTTCTACCGCCAGTTCGCGATGACTATCGCCATCGCTACGGTTATTTCGGCGATCAACTCGCTGACCTTGTCGCCGGCTCTGGCGGCGGCACTGCTCAAG CCGCACGGGGCACCGCCGGATCTGCCTGCGCGGATCATCAACCGCTTATTCGGCTGGATATTCCGTCCGTTTAACCGTTTTTTTCTACGCAATGCGCAGC GCTACGAGTCGCTTGTAGGTCGCAGCCTGAGTCGCAGAGGACTGGTTTTTGGGGTGTATGTGCTGCTGCTCGGCGGCACCGCATTGATGTTCAATCAGGT ACCCGGCGGTTTTATTCCGACCCAGGACAAGACCTACCTGATTGGCAGCATTCGTTTGCCTGAAGGGGCGTCGCTAGACCGCACCGAAGCAGTCGCGCGG CGGGTTAGTGAACTGGCGCTGAATACCGAAGGCGTGTCCGATGCGGCCGCTTTTGTTGGCTTCAACGCACTGCAGGGCACCAACACACCTAACGTCGGCA CCGTGTTTATTCTGTTCGATGATTTCTCGGTGCGCGATCGCACCGCGCAGGCGATCTCGGATGACCTCAACGCGCAACTGGGTGGGATTAACGAAGGCTT CGCGATTACCTTTATGCCGCCACCGGTATTTGGCCTGGGTGCCGGTTCGGGCTACTCGCTGTATATCCAGGATCGTCGTGGCGCCGGTTATGGCGAGCTG CAGACCGCGACCAATGATCTGGCCCTGGCCCTGAGCGAAACGCCGGGCATGTTCTACCCCTTCAGTTCCTACCAGGCCAATGTGCCGCAACTGGACGCCG ACGTGGATCGCATGCAGGCCAAGGCGCAGGGCGTGCAGTTGGACGACCTGTTCGGCAGCCTGCAGTTGTATTTCGGCTCGCAGTACATCAACGACTTCAA TCTGTTTGGTCGTACTTACCGCGTTATGGCCCAGGCTGATGCGCCGTTCCGTGATGACCCCAGCGACATTGACCACCTTTATACGCGTAACGCCAATAAT GAGATGGTGCCGCTCAATACCATGGTCACCCTGCGCGAGAGCTTCGGGCCGGACCCGGTGATCCGCTACAACGGTTATCCGGCGGCCGACTTGATTGGCC AGTCAGATCCGGCCGCGCTCTCCTCGGCGCAGACGCTGGCAGCCGTAATGGCGGTAGCGGATGAGGTATTGCCCGCTGGCATGACTCTGGAATGGACTGA CTTGAGCTTCCAGCAAGTGACCCAGGGCAATGCGGCCATGGTGGTGTTCCCGCTGGCCTTGCTGCTGGTGTTTCTGGTGCTCGCTGCTCTGTATGAAAGC TGGGTAATGCCGCTGGCGGTGATTCTGATCGTGCCGATGTGTTTGCTCGCGGCGCTGTTCGGTGTGTGGATGGTCGGCGGCGACAACAATATCTTTGTCC AGGTCGGGTTGGTGGTGTTGATGGGCTTGGCGTGCAAGAACGCGATCCTGATCGTCGAATTTGCTCGTGAACTGGAAATTCAAGGCCGCGACACCGTGAG TGCCGCGCTGGAAGCCAGCCGTCTGCGGCTGCGCCCAATCATCATGACCTCGGTGGCCTTTATTGCCGGTGTCGTGCCGCTGGTATTGGCCTCCGGCGCC GGTGCCGAGGTGCGCAACGCCATGGGCATCACGGTGTTCACCGGGATGATCGGTGTGACGCTGTTCGGCCTGCTGTTGACCCCGGTGTTTTATGTGGCCC TGAGGACCCTGGCCAAAGGCTTTGAGCATAAGGCTGTGAAGCTTGAAGGAGGCTCACATGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTGACCATGACGCTGTTATTGGCGTCGTTGTTAAGTGCCTGCGCGGTGGGACCGGACTACCAGCCCCCTGCGTCGGTGTCACTGGAGCGGTTTGCCCAT GATCAGAATGAGGAGGAAGTGACGACGGCTAGCCTGGAGTTAAGCAACGAGCAGCGATTCTGGCAGGGCTTTCAGGACCCGCTGCTGGCGCAATTGATTG AGCAAGCGCTGACGGACAATCAGGATCTTCAGGCGGCGCTGGCGCGCTACCAGGAGGCTGAAGCGCTGCTACGCGGTGCTCGGCGCGATCAATTGCCGAG TGTAACGGCGGGTGCTGGCGTCTCAGGGCAGCGCCTGGCGGAAGTGGAGCGCAGCCAGCCTGATCAGGAACGCCTGGAGCTGTATCAGGCGGGTGTAGCA TTGAGCTGGGAGCTGGATCTTTTCGGACGTCTGCGGCGCGCTACTGAAGCCTCCGAGGCTGAGTTGCAGGCGGCAGGCGCCGACAGACAGACATTGCAGG
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| Amino Acid Sequence |
>transporter
MNFSRFFVDRPIFASVLSIIIFVVGLISIPLLPVSEYPEVVPPSVLVSASYPGANPKTISETVATPLEEAINGVEDMIYMKSVAGSDGSLALTVTFALGT DPDQAQVQVQNRVSQALPRLPEDVRQLGVTTQKQSPNLMMAVHLTSPDDSLDATYIRNYAVLHIRDELARIPGVGQAGLFGAGDYAMRLWIDPQRAAALG ITAGDISAAVREQNIQVSAGQIGAPPMPNGSDMLISINAQGRLETVEEFENIVLKTGGQGEVTLLKDVARIELASSQDALRALLNGRQAVALPIFQAPGS NSLDVSAAVREKMAELQADFPEGLSWEVAYDPTVFVSTSIKAVIITLLEAVALVVLVVILFLQTWRASLIPLLAVPVSIVGTFAVLLLMGFSINTLTLFA MVLAIGIVVDDAIVVVENVERNIEAGLAPLAAAHQAMREVSGPIVAISLVLCAVFVPMAFLDGITGQFYRQFAMTIAIATVISAINSLTLSPALAAALLK PHGAPPDLPARIINRLFGWIFRPFNRFFLRNAQRYESLVGRSLSRRGLVFGVYVLLLGGTALMFNQVPGGFIPTQDKTYLIGSIRLPEGASLDRTEAVAR RVSELALNTEGVSDAAAFVGFNALQGTNTPNVGTVFILFDDFSVRDRTAQAISDDLNAQLGGINEGFAITFMPPPVFGLGAGSGYSLYIQDRRGAGYGEL QTATNDLALALSETPGMFYPFSSYQANVPQLDADVDRMQAKAQGVQLDDLFGSLQLYFGSQYINDFNLFGRTYRVMAQADAPFRDDPSDIDHLYTRNANN EMVPLNTMVTLRESFGPDPVIRYNGYPAADLIGQSDPAALSSAQTLAAVMAVADEVLPAGMTLEWTDLSFQQVTQGNAAMVVFPLALLLVFLVLAALYES WVMPLAVILIVPMCLLAALFGVWMVGGDNNIFVQVGLVVLMGLACKNAILIVEFARELEIQGRDTVSAALEASRLRLRPIIMTSVAFIAGVVPLVLASGA GAEVRNAMGITVFTGMIGVTLFGLLLTPVFYVALRTLAKGFEHKAVKLEGGSHE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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