Pseudomonas pelagia CL-AP6, K787_RS0107155
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTGCTGCTGGTGTTTCTGGTGCTCGCTGCTCTGTATGAAAGCTGGGTAATGCCGCTGGCGGTGATTCTGATCGTGCCGATGTGTTTGCTCGCGGCGCTG TTCGGTGTGTGGATGGTCGGCGGCGACAACAATATCTTTGTCCAGGTCGGGTTGGTGGTGTTGATGGGCTTGGCGTGCAAGAACGCGATCCTGATCGTCG AATTTGCTCGTGAACTGGAAATTCAAGGCCGCGACACCGTGAGTGCCGCGCTGGAAGCCAGCCGTCTGCGGCTGCGCCCAATCATCATGACCTCGGTGGC CTTTATTGCCGGTGTCGTGCCGCTGGTATTGGCCTCCGGCGCCGGTGCCGAGGTGCGCAACGCCATGGGCATCACGGTGTTCACCGGGATGATCGGTGTG ACGCTGTTCGGCCTGCTGTTGACCCCGGTGTTTTATGTGGCCCTGAGGACCCTGGCCAAAGGCTTTGAGCATAAGGCTGTGAAGCTTGAAGGAGGCTCAC
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| DNA Sequence for Gene |
>K787_RS0107155
ATGAATAAGCTGACCATGACGCTGTTATTGGCGTCGTTGTTAAGTGCCTGCGCGGTGGGACCGGACTACCAGCCCCCTGCGTCGGTGTCACTGGAGCGGT TTGCCCATGATCAGAATGAGGAGGAAGTGACGACGGCTAGCCTGGAGTTAAGCAACGAGCAGCGATTCTGGCAGGGCTTTCAGGACCCGCTGCTGGCGCA ATTGATTGAGCAAGCGCTGACGGACAATCAGGATCTTCAGGCGGCGCTGGCGCGCTACCAGGAGGCTGAAGCGCTGCTACGCGGTGCTCGGCGCGATCAA TTGCCGAGTGTAACGGCGGGTGCTGGCGTCTCAGGGCAGCGCCTGGCGGAAGTGGAGCGCAGCCAGCCTGATCAGGAACGCCTGGAGCTGTATCAGGCGG GTGTAGCATTGAGCTGGGAGCTGGATCTTTTCGGACGTCTGCGGCGCGCTACTGAAGCCTCCGAGGCTGAGTTGCAGGCGGCAGGCGCCGACAGACAGAC ATTGCAGGTTGCGCTCGCTGGCCAGTTGGCCAGCAGCTACTTCCAGTTGCGTGGCCTGCAGCAGCAGCGGCGGGTGGCTGAAGAGAATGTGGGTTTGCAG CAGGCCTCACTGGATATCGTCAGCGCCCGCCTGGAGGCTGGTCGTGGCACCCTGTTTGACCAGGTCCGTGCGCGCGCTCAGCTGGATGCGACCCGCGCAG CCATTCCTGAGATCAATGCCGGCATTGGCGCGGCCATGCATCGGCTCGGCGTGCTAACCGGCCAGGCGCCTACCGCACTGATGTTGCAGCTCGCAGTACC GGGTGCTTTGCCTGAGAGCACGCCTTCGATCGCCGCTGGCAGCCCCGGCGATGTGTTGCGTCGGCGGCCAGATATTCAGGCGGCAGAGCGCCGGCTAGCA GCAGCCAGTGCGCGCATTGGTGTTGCCAGTGCCGACCTGTTTCCGCGCTTCACGTTGCAAGGCCTGCTGGGCTCCCTGGCTGGCAATGGCTCGGATCTGT TCACTGGCGGCGCTCGTACCGGGAGGGTAGCGCTGGGTATCGATTGGAGCTTCCTCGACCGGGCGCAGGTGCAGGCACGTATTGATATCGCTGATGCGCA GTCTGCAGCACTACTGGCAGATTATCGGCAAACTGTTTTGCTGGCGCTGGAGGAAACCGAAACCTGGCTACTGCGCTATCAGCAGTCGCATGAACGCGCG GCTTTGCTGCAGAGTGCCACCGATGCTGCCACCCAGGCGGTCGAGCAGGCGCGTGACCGTTATGACCAGGGCTTTATCGGTTATTTCGAATTGCTCGCTG CGGAGCAGGAGCTGACGGGTATGCGTGACAGTCTGGTGCAAAGCCGGACCGCAATGGTGCTGGCGATGGTCAACGTTTATCGGTCGTTGGCCGGAGCGCC GTTGCCTGGTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCCCCGATTAAACCATGGGAATCCAAGATGCAGATGCGCAAAAACCGCTCCCTAGGGAAGCGGTTTTTGAGTTTTGCGCGTTTTTTGTGGTGCTACTAA ACCTTGGGTCGTCGACCCAGGATCAGTGAAACCACGAAGAGCACCAGGAAGACCAGGAACAAAATCTTGGCAATCCCTGTTGCGGTGCCTGCAATACCAC CAAAGCCCAGTACGGCGGCGATGATGGCGATAATCAGAAATGTAACAGCCCAACTCAGCATAGTAAGTTCTCCTTTAAATAGGGCTTGCGCCCAGCCTAG GCCAGCACAAGGCTAGCCATTACAGGCTGCACCAGGTCAACTGCGCCTGTGCCGCCCTAGTGTTGCCCATCTATTACTCGGTGGCTTTTTTCAGTGCGCG CATGCGGTCATGACAAGCCCGAACTTTGGGCATTTCCAGTACCAACAGTGTACGTACATCGGCTTCGGACTCTTCCAGCGCTTCTTCAAACGCATGCAGG
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| Amino Acid Sequence |
>RND transporter
MNKLTMTLLLASLLSACAVGPDYQPPASVSLERFAHDQNEEEVTTASLELSNEQRFWQGFQDPLLAQLIEQALTDNQDLQAALARYQEAEALLRGARRDQ LPSVTAGAGVSGQRLAEVERSQPDQERLELYQAGVALSWELDLFGRLRRATEASEAELQAAGADRQTLQVALAGQLASSYFQLRGLQQQRRVAEENVGLQ QASLDIVSARLEAGRGTLFDQVRARAQLDATRAAIPEINAGIGAAMHRLGVLTGQAPTALMLQLAVPGALPESTPSIAAGSPGDVLRRRPDIQAAERRLA AASARIGVASADLFPRFTLQGLLGSLAGNGSDLFTGGARTGRVALGIDWSFLDRAQVQARIDIADAQSAALLADYRQTVLLALEETETWLLRYQQSHERA ALLQSATDAATQAVEQARDRYDQGFIGYFELLAAEQELTGMRDSLVQSRTAMVLAMVNVYRSLAGAPLPG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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