Pseudomonas pelagia CL-AP6, K787_RS0101420

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF13180
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 225 242 3.8E-52
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 29 472 0.0
CDD cd00987 PDZ_serine_protease - - 387 472 1.32708E-14
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 128 148 3.8E-52
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 229 353 1.45E-24
Gene3D G3DSA:2.30.42.60 - - - 379 476 1.9E-15
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 407 474 9.33E-12
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 29 264 4.6E-96
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 169 193 3.8E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 311 323 3.8E-52
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 28 361 4.3E-96
Pfam PF13180 PDZ domain IPR001478 PDZ domain 388 470 8.9E-9
SMART SM00228 pdz_new IPR001478 PDZ domain 386 465 3.3E-7
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 240 363 2.1E-9
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 266 371 4.6E-26
Pfam PF13365 Trypsin-like peptidase domain - - 98 232 3.5E-33
CDD cd00987 PDZ_serine_protease - - 271 360 8.06805E-24
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 107 119 3.8E-52
SMART SM00228 pdz_new IPR001478 PDZ domain 271 353 1.1E-15
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 203 220 3.8E-52
Pfam PF13180 PDZ domain IPR001478 PDZ domain 273 361 5.1E-15
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 27 263 7.73E-68
Gene3D G3DSA:2.40.10.120 - - - 28 264 6.7E-81

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.