Pseudomonas pelagia CL-AP6, K787_RS0100435
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas pelagia CL-AP6 111.KCCM90073.1_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCATGCTGCTGAAAGTCCATACGGAGCTCAGTCCTGCGGAGACCGGCGGCAGTCTGCATGACCGCCTGGCTCTGCTCGGCTCGCGCGTACTGGTAGAGG CCATCAGCGGCATGGCCGCCGGCACGCTACAAGGTGAGGTGCAGAACGATAGCCTGGCGACCTACGCACATAAACTCGATAAACGCGCAGCGACCATCGA TTGGCAGCGTCCGGCGAGCGAACTGGATCGGCTAATACGAGCATTCAACCCTTGGCCGTTGGCCCATGCGCGCTGGCAGAATCAGCCGCTGAAGATCTGG GCCGCCGAGCCGGTCAGCGCAGAAGGTAACCCCGGGCAGGTGCTTGAGTGCAGCAAAAACGGCCTGGTAGTGGCTTGCGGCCAAAAGGCGCTGCGCCTTA CCCGGCTGCAGCTCCCGGGCGGCAAGCCGTTGGCCTTTAGCGACCTGTATAACGCGCGCCGCGATCAATTTGCCGTCGGCCTGATGCTCGGTAACGGTCA
|
|
| DNA Sequence for Gene |
>K787_RS0100435
ATGACCCCGCGCCTGGCCGCCAGCAATGCGCTCAGCGCCGTCATGGCCGGCAAGGCCTCCCTGGGCACCAGCCTGCCAGCGCAGCTGCAGCATGTGATAC CCCGCGACCAGGCGCTGGCACGTGAGCTGGCATTCGGTACCGCCCGCTGGTTCCAACGGCTCGATGGGCTGGCTAACGCACTGCTGGAAAAACCCCTGAA AGCCGCCGACCGCGATCTGCACGCGTTATTGCTGGTGGGTCTGTACCAACTGCTCTACACCCGGATTCCCGCCCACGCCGCCATCGATGAAAGTGTCAAT GCGGCCAACACGCTGAAAAAACCCTGGGCCAAAGGTCTGCTAAACGCGGTGCTACGCCGAGCGCAGCGTGAGTCCGAAGAATTGCTGAATTCACTGGAGC GTGACCCGACCATCCGCCTGTCCCACCCACGCTGGCTGCAGAAACAGCTGAAAGCCGACTGGCCGGAGCACTGGGAGGCTATCTGCAACGCCAATAACCA GCACCCGCCGATGACCTTGCGCATCAATCAGCAGAAAACCACCCGTCAAGCCTATCTCCAGCAGTTACAAGAGGCAGGCATGGCAGCCCAAGCCTGCCCG TTCAGCGCTGTCGGTATCACCCTGGTCAGCGCCTGCGATGTACAGCAATTGCCCGGTTTCGCGCTAGGGCTGGTCAGCGTCCAGGACGAGGCAGCGCAGT TGGCTGCGCCGTTGCTCGAGCTCAAGGCGGGGCAGCGGGTATTGGACGCTTGCTGCGCACCCGGCGGCAAGACCTGTCAGATATTGGAGTCCGAGGCACA GCTCGGCGCTGTGTTGGGGTTGGATCTGGAGCCTGCGCGGCTGCAACGCGTGCGCGACAATCTCCAGCGCCTGGGCTTGCAGGCCGAACTGAAGGCCGCC GATGCACGGGACCTGCAGGCATGGTGGGACGGCCAGCCGTTTCAACGTATTCTGCTGGACGCACCCTGTTCGGCTACCGGCGTGATCCGCCGCCATCCCG ATATAAAACTGACCCGCCAAGCCGCAGACATCGTCGCCCTGTCCAGCCTGCAAGGGCAGATCCTCGATGCCCTATGGCAAACCCTGGAGGTCGGCGGGAT TCTGGTCTATGCCACCTGCTCAGTGCTGCCGGCAGAAAACACTCAGGTGATCGAAGCCTTTCTGGCACGTCAACCCGGGGCCCGCGAACTGGACATATGC GCCGCCTATGGCTTGCCCCAGGCCCACGGCCGACAACTAATGCCACAACCACAGGGCCATGATGGCTTTTATCTGGCAAAACTGATGAAAATAAGCGCCA GCAGCTCAGTGCAGGGCTACAATTCGGGGAATAAAGGGACCTCAGCAATATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGATCATTATTCTCGGCGCCGGCCAAGTGGGCGGCAGCTTGGCCGCCGAGCTGGCCAGCGAAGCCAACGACATTACCGTCATCGATACCGACGGCCCACG CCTGCGTGAACTCAGCGACCGCCTGGACATCCGTACCGTGGTCGGCAAAGGTTCGTTTCCGACCGTGTTACGCCAGGCCGGCGCCGATGACGCCGACATG CTGATCGCCGTCACCAGCAGTGACGAGACCAACATGATTGCCTGCCAGGTCGCTTACACGCTGTTTCGTACGCCGACCAAAATTGCGCGCATCCGTGAAT CCGCTTACCTGACCCGCGGCGGACTCTTTCATAACGAAGCCGTGCCGATTGACGTATTGATCAGCCCCGAGCAGGCAGTGACCACTTACGTTAAACGCTT GATCGAGAATCCCGGCGCACTGCAGGTGCTGGATTTTGCTGAAGGTAAGGTGCAGTTGGTGGCCGTGCGGGCTTACTACGGCGGCCCGCTGGTCGGTCAG
|
|
| Amino Acid Sequence |
>16S rRNA methyltransferase
MTPRLAASNALSAVMAGKASLGTSLPAQLQHVIPRDQALARELAFGTARWFQRLDGLANALLEKPLKAADRDLHALLLVGLYQLLYTRIPAHAAIDESVN AANTLKKPWAKGLLNAVLRRAQRESEELLNSLERDPTIRLSHPRWLQKQLKADWPEHWEAICNANNQHPPMTLRINQQKTTRQAYLQQLQEAGMAAQACP FSAVGITLVSACDVQQLPGFALGLVSVQDEAAQLAAPLLELKAGQRVLDACCAPGGKTCQILESEAQLGAVLGLDLEPARLQRVRDNLQRLGLQAELKAA DARDLQAWWDGQPFQRILLDAPCSATGVIRRHPDIKLTRQAADIVALSSLQGQILDALWQTLEVGGILVYATCSVLPAENTQVIEAFLARQPGARELDIC AAYGLPQAHGRQLMPQPQGHDGFYLAKLMKISASSSVQGYNSGNKGTSAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|