Pseudomonas sp. PAMC 25886, MUM_RS0130685

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. PAMC 25886 ctg7180000004568, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCAGCAGGACGACGAGATCGTGCGCCGCGAGGTGTTCGGGCCAGTGGTGTCGGTGACCAAGTTTAATGACGAAGCCCAGGTATTGGGCTGGGCCAATGAT TCGGACTACGGCCTGGCGTCGTCGGTATGGACCGCCGATGTCGGCCGCGCCCACCGCCTGGCTGCGCGTTTGCAGTACGGCTGCACCTGGGTGAATACCC ACTTCATGCTGGTCAGCGAAATGCCTCATGGCGGTCAGAAACTGTCCGGCTATGGCAAGGACATGTCCATGTATGGCCTGGAGGACTACACCACCGTTCG CCATGTGATGTTCAAGCACTGACCCATAACCCCTGTCGAAGCGAGCTCACTGTGGCGAGGGAGCTTGCTCCCGCTGGAGTGCGAAGCGCTCCCAGGATTT TTGGGGCCGCTACGCAGCCCAGCGGGAGCAAGCTCCCTCGCCACAACGGCCCGCTCCCACAGGGGATCTCCTCATAACAATAAATAATTCGCAGGTTCCC
DNA Sequence for Gene
>MUM_RS0130685
ATGGACATCACCCGCCGCGACTTCCTCAACGGCGTCGCCATCACTATTGCCGCCGGCATGACGCCGTTGCAAATCCTCCAGGCCGCTCCCGATGGCCGTT ACTACCCGCCCGCCCTCACCGGCTTGCGTGGCAGCCATGTCGGCTCGTTCGAAATCGCCCACCAGATGGGCTGGGAAAAGAAGGTGTTCGACACCGACAA ATTGCCGATCACCGAGGACTATGACCTGGTGGTGGTCGGCGGTGGCCTGAGCGGTTTGTCGGCGGCGTGGTTCTACCGTGAGAAGCACCCGAAGGCGAAG ATCCTGATCCTGGAAAACCACGACGACTTCGGCGGCCACGCCAAGCGCAACGAATTCCAGGCCGGTGGCCGGATGATCATCGGCTACGGCGGCAGCGAAG CGTTCCAGTCGCCGAATCATCTTTACAGCAAAGAAGTAAACGGACTGTTGAAGAAACTCGGGGTGAACATCAAGCGCTTCGAGACCGCGTTTGACCGTGA GTTCTACCCGGGCCTTGGCCTGTCACGCGGGGTGTTCTTCGACAAGGAAAACTTCGGCGAAGACAAACTGGTCACCGGCGACCCGACGCCGATGGTCGCC GACGACATCGCCCCGGACCAATTGCATGCGCGCTCCATCAGCGACTTCATCAATGACTTCCCGCTGCCGCAAGCTGATCGCGAGGCTTTGATTGCCCTGC ATGTCGCCCCCAGGGATTACTTGCCGGGCAAGACCGCCGAGGAAAAGGCGGACTACCTGGCCGCCACCAGCTACCGCGATTTCCTGCTCAAGGACGTGGG ATTGTCGGAAGGCGCGGTGAAGTACTTCCAGAGCCGCACCAACGACTTCATGGCCTTGAGCATCGACGCCGTGGCTTCGGCCGATGCCTACAGCGTGGGT TTCCCGGGCTTCGCCGGAATGAACCTCGCGCCCATCAGCGAAGAAGCCGCGGCAGAAATGGAAGAGCCCTACATCTACCACTTCCCCGACGGCAACGCCT CGCTGGCGCGGCTGCTGGTGCGCAGCCTGATTCCGGCCGTGGCGCCCGGGCACACCATGGAAGACATCGTGCTGGCGCCGTTTGATTACGCCAAACTCGA TCAACCCAAGACGCCGGTGCGGGTGCGCTTGAACAGCACGGCGGTGAGTGTGCGTAACGTCAGTGACGGCGTGCACATCGGCTACAGCCGTGGTGGCCAA CTCGCACAGGTGCGTGGCAAGCGCTGCATCCTGGCGTGCTACAACATGATGATCCCGTACCTGCTGCGGGACCTGCCGGAGCAGCAGGCCCAGGCCTTGA GCCAGAACGTGAAGTACCCGCTGGTGTACACCAAAGTCGTGGTGCGCAACTGGACATCATTCCAGAAGCTGGGGGTGCATGAGATCTACGCGGCGACCCA GCCCTACAGCCGGATCAAGCTCGACTACCCGGTGAGCATGGGCGGCTACGAGCACCCGCGTGACCCGACGCAGCCGATCGGTTTACACATGGTGTACGTG CCCACCAGCCCCAACAGCGGCATGAACGGCCGCGACCAGGCCCGCGCCGGGCGGGGCAAGCTGTATGGGCAGACGTTTGAACAACTGGAAGCGCAACTGC GGGATCAGCTGCAACGCATGCTCGGCCCGGGCGGCTTCAACCACCAGACCGACATTCTGGCGATCACTGTAAACCGTTGGTCACACGGCTATGCGACCTT CTCCAACAGCTTGTTTGACGATGCCGATGAAAGCGAAAAACTGAAGGACCTGGCGCGCAAACCGCTGGGGCATGTGAGCATCGCCAACTCGGACGCGGCG TGGAGTGCATATGCCCATGCGGCGATTGATGAGGCGTATCGGGCGGTAGGTGAAGTGGGTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CCCCTGCTCTTCAAGCAGAAGGGCTTTTGTGGCGAGGGGGCTTGTCCCCCGTTGGGCTGCGTAGCAGCCCCAAAAGCTGACTTGAATTCCTGCCTGGAAA GGGCGGTGGCCTTAATGGGGCCGCTGCGCAGCCCAACGGGGGACAAGCCCCCTCGCCACAGAAAATCCCATCTTCACAGACACCAGCGTTGTATGGAAAC GTCTTGTTTCATATGCAACGCCATCAACCCGCCATCAATCATTTTTCCTTCCGCACCGAACCGCTTAAGCTATTTGGCATCTGTTTAATGTCCGTTGCGT TTGGCCGAAGGCATGTCCGAACCGTTTTTCTTGATCCAGCACGTGCCAGGAACGGCGCGGGATTGTTCACGACAGGTTGTATTTATGCACCGCAGGAATT TGCTCAAAGCGTCCATGGCCATTGCGGCTTACACCGGTCTGTCGGCCAGTGGCCTGCTGGCCGCTCAAGCCTGGGCGGGCAATCGCGCCGCCGATGGCGA
Amino Acid Sequence
>spermidine dehydrogenase
MDITRRDFLNGVAITIAAGMTPLQILQAAPDGRYYPPALTGLRGSHVGSFEIAHQMGWEKKVFDTDKLPITEDYDLVVVGGGLSGLSAAWFYREKHPKAK ILILENHDDFGGHAKRNEFQAGGRMIIGYGGSEAFQSPNHLYSKEVNGLLKKLGVNIKRFETAFDREFYPGLGLSRGVFFDKENFGEDKLVTGDPTPMVA DDIAPDQLHARSISDFINDFPLPQADREALIALHVAPRDYLPGKTAEEKADYLAATSYRDFLLKDVGLSEGAVKYFQSRTNDFMALSIDAVASADAYSVG FPGFAGMNLAPISEEAAAEMEEPYIYHFPDGNASLARLLVRSLIPAVAPGHTMEDIVLAPFDYAKLDQPKTPVRVRLNSTAVSVRNVSDGVHIGYSRGGQ LAQVRGKRCILACYNMMIPYLLRDLPEQQAQALSQNVKYPLVYTKVVVRNWTSFQKLGVHEIYAATQPYSRIKLDYPVSMGGYEHPRDPTQPIGLHMVYV PTSPNSGMNGRDQARAGRGKLYGQTFEQLEAQLRDQLQRMLGPGGFNHQTDILAITVNRWSHGYATFSNSLFDDADESEKLKDLARKPLGHVSIANSDAA WSAYAHAAIDEAYRAVGEVG
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site