Pseudomonas sp. PAMC 25886, MUM_RS0127395
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004559, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCTTGAAGAGCGCGATGCCCGGGAGTTGCTGGAAGTCGGCGGCACCCGTGTGGCGGCTGATGTGGACGCCTTCAACCCGGTGTTTGACGTAACGCCGGC GGACCTGATTGATGTGATTGTCACCGAAAAAGGCATCGTCGAACGTCCCGACACGGCGAAGCTGGCGCAACTGATGTGTCGTAAACGCCTGCATTAAGGC AATTTGCCCGCCAAAAACGCCTTGGATCCAGCTCTAAGGCCCTCTCGTCGCCGTCAAGCCTGTCATCCGTCAACTTACTATGCTCCATGCGCATCAGGGG GATAGGTGCGTGGCGGCGATTGTGATAACATCCGGCGGTTTCCAGGGTCACCTCAAGGGGTAACCTTTAATGCGCAGATCCGTGTCATAACTCGTTGATT TGTCGTAAGTCGTTGCCAGGCACCATGCCAGCAGCGGCGAGCTTCGTTCGTCCCATATGGATGTGACGAGGTTTCACCCGAAAAAGGAATCAGGCTTCTC
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| DNA Sequence for Gene |
>MUM_RS0127395
ATGGGCGAACTGGCCAAAGAAATCCTCCCGGTCAATATCGAAGACGAGCTGAAACAGTCCTACCTCGACTACGCGATGAGCGTAATTGTCGGTCGGGCAC TGCCTGATGCGCGCGATGGCTTGAAGCCCGTGCACAGGCGTGTGCTGTTCGCGATGAGCGAGCTGGGTAACGACTGGAACAAGCCGTACAAGAAATCTGC CCGTGTTGTCGGTGACGTGATCGGTAAGTATCACCCTCACGGCGACACTGCGGTGTACGACACCATCGTTCGGATGGCCCAGCCGTTTTCCCTGCGCTAC CTGCTGGTAGACGGCCAGGGCAACTTCGGTTCGGTCGACGGCGACAACGCTGCGGCCATGCGATACACCGAAGTGCGCATGACCAAGCTGGCGCACGAGC TGCTGGCTGACCTGCACAAAGAAACCGTGGACTGGGTGCCGAACTACGACGGCACCGAAATGATCCCGGCGGTCATGCCGACCCGTATTCCCAACCTGCT GGTCAACGGCTCCAGCGGTATCGCCGTGGGCATGGCCACCAACATCCCGCCACACAACCTCGGTGAAGTCATCGACGGTTGCCTGGCCCTCATCGACAAC CCCGAGCTGACCGTCGATGAGCTGATGCAATACATCCCGGGCCCGGACTTCCCGACTGCCGCGATCATCAACGGTCGTGCCGGTATCATCGAAGCCTACC GCACCGGCCGTGGCCGCATTTACATGCGCGCCCGCTCGATCATCGAAGACATCGACAAAGTCGGTGGCCGCCAGCAGATCGTCATCACCGAACTCCCTTA CCAGTTGAACAAGGCGCGTCTGATCGAGAAGATCGCCGAGCTGGTTAAAGAGAAGAAGCTGGAAGGCATCACCGAACTGCGCGACGAGTCTGACAAAGAC GGTATGCGCGTAGTGATCGAGTTGCGTCGTGGCGAAGTGCCTGAGGTGATCCTCAACAACCTCTACGCCCAGACCCAGCTGCAAAGCGTGTTTGGTATCA ACGTGGTAGCGCTGATCGACGGCCGCCCGCGCATCCTGAACCTCAAGGATCTGCTGGAAGCCTTCGTGCGTCACCGCCGCGAAGTGGTCACCCGCCGTAC CGTATTCGAACTGCGCAAGGCCCGTGAGCGCGGCCACATCCTGGAAGGCCAGGCGGTTGCGCTGTCGAACATCGACCCGGTCATCGCCCTGATCAAGGCC TCGCCGACGCCGTCGGAAGCCAAGGAAGCCCTGATCAAGATGCCGTGGGAATCCAGCGCCGTAGTGGCGATGGTTGAGCGTGCCGGTGCCGATTCGTGCC GTCCGGAGACCCTGGACCCACAATACGGCCTGCGCGACGGCAAGTACTTCCTGTCCCCGGAACAGGCCCAGGCCATCCTGGAACTGCGTCTGCACCGCCT GACCGGCCTGGAGCACGAGAAGCTGCTGGCCGAGTACCAGGAGATTCTCAACCAGATCGGCGAGCTGATCCGCATCCTCAACAGCGCCGTGCGCCTGATG GAAGTGATCCGCGAAGAGCTGGAAGTGATCCGCGCCGAATACGGCGACGTGCGTCGCACCGAGATTCTCGATGCCCGTCTCGACCTGACCCTGGGTGACA TGATCCCGGAAGAAGATCGCGTCGTGACCATCTCCCACGGTGGCTATGCCAAGACCCAGCCATTGGCTGCGTACCAGGCCCAGCGTCGTGGTGGTAAAGG CAAGTCGGCTACCGGCGTCAAGGATGAGGACTACATCGCTCACCTGCTGGTTGCCAACAGCCACACCACGCTGCTGCTGTTCTCCAGCAAGGGCAAGGTG TACTGGCTGAAAACCTATGAAATCCCGGAAGCGTCCCGTGCTGCCCGTGGTCGTCCGTTGGTCAACCTGCTGCCGCTGGACAGTGATGAATACATCACCA CCATGCTGCCAGTAGACGAATACACCGAAGGTCACTTCATCTTCATGGCCACCGCCAAGGGCACCGTGAAGAAGACCCCGCTGGAATCCTTCAGCCGTCA ACGCAGCGTGGGCCTGATCGCCCTCGAACTGGACGAAGGCGACGTATTGATCAGCGCGGCGATCACCGACGGCGAGCGTGAAGTCATGCTGTTCTCCGAC GGCGGCAAGGTCACGCGCTTCAAGGAATCCGACGTTCGCGCCATGGGCCGTACCGCCCGCGGTGTGCGCGGCATGCGTCTGCCGGAAGGGCAGAAGCTGA TTTCGATGCTGATCCCGGAAGAAGGCAGCGAGATTCTCACTGCTTCGGCTCGTGGTTACGGCAAGCGTACTGCTATCAGCGAGTTCCCTGAGTACAAGCG TGGCGGCCAGGGCGTTATCGCCATGGTCAGCAACGATCGCAATGGCCGTCTGGTCGGCGCGGTCCAGGTGCTGGATGGCGAGGAAATCATGCTGATTTCC GACCAGGGCACCCTGGTGCGTACCCGGGTTGATGAAGTGTCGAGCCTGGGGCGTAACACCCAGGGCGTGACCTTGATCAAGCTGGCCAGCGACGAAACCC TGGTAGGCCTGGAGCGTGTCCAGGAGCCATCGGAAGTCGAGGGTGAGGAGCTGGAAGGTGAAGAGCTTGAGGGCGACGTGATCGCCGGTGGCGATGACAA CGTCGACGAGCCAACACTCGACGCTGCCGCAGACGAAGAAGAACCGCAGGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGACACACAGGGGGCGGATGAAGATTCGCCCCCTTGTTGTTTGTCCCTTTTGAAATACGACGCCGCGCCGCTCTTGTAGGAGCCGGCTTGCCGGCGAT GGCATCAACTCGGTTCAAGTGAAGCGCCGAGTCGTTTGCATCGCTGGCAAGCCAGCTCCTACAGGGTTCCGCGTTGCGGGATGTTGATTGCAGTCCCACC AGATCAGAGAGATTGGATGTGAGCAAGAGAGCCTATAACTTCTGTGCCGGTCCCGCGGCGCTTCCTGAAGCAGTCCTGCAGCGCGCGCAGGGTGAACTCC TCGACTGGCATGGAAAAGGCCTCTCCGTGATGGAAATGAGCCATCGCAGCGATGAGTTCGTGTCCATTGCCACCAAGGCCGAGCAGGATATGCGCGACTT GCTGGACATCCCGTCTGACTACAAAGTGTTGTTCCTGCAAGGCGGCGCAAGCCAGCAGTTCGCCCAGATCCCGCTGAACCTGCTGCCGGAAGACGGCACG
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| Amino Acid Sequence |
>DNA gyrase subunit A
MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLFAMSELGNDWNKPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRY LLVDGQGNFGSVDGDNAAAMRYTEVRMTKLAHELLADLHKETVDWVPNYDGTEMIPAVMPTRIPNLLVNGSSGIAVGMATNIPPHNLGEVIDGCLALIDN PELTVDELMQYIPGPDFPTAAIINGRAGIIEAYRTGRGRIYMRARSIIEDIDKVGGRQQIVITELPYQLNKARLIEKIAELVKEKKLEGITELRDESDKD GMRVVIELRRGEVPEVILNNLYAQTQLQSVFGINVVALIDGRPRILNLKDLLEAFVRHRREVVTRRTVFELRKARERGHILEGQAVALSNIDPVIALIKA SPTPSEAKEALIKMPWESSAVVAMVERAGADSCRPETLDPQYGLRDGKYFLSPEQAQAILELRLHRLTGLEHEKLLAEYQEILNQIGELIRILNSAVRLM EVIREELEVIRAEYGDVRRTEILDARLDLTLGDMIPEEDRVVTISHGGYAKTQPLAAYQAQRRGGKGKSATGVKDEDYIAHLLVANSHTTLLLFSSKGKV YWLKTYEIPEASRAARGRPLVNLLPLDSDEYITTMLPVDEYTEGHFIFMATAKGTVKKTPLESFSRQRSVGLIALELDEGDVLISAAITDGEREVMLFSD GGKVTRFKESDVRAMGRTARGVRGMRLPEGQKLISMLIPEEGSEILTASARGYGKRTAISEFPEYKRGGQGVIAMVSNDRNGRLVGAVQVLDGEEIMLIS DQGTLVRTRVDEVSSLGRNTQGVTLIKLASDETLVGLERVQEPSEVEGEELEGEELEGDVIAGGDDNVDEPTLDAAADEEEPQE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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