Pseudomonas sp. PAMC 25886, MUM_RS0127340
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004559, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTTACCACCCGGAAATCATCCTGGCCGGCCGTCGTTTGAATGATGGCATGGGCGCTTACGTTGTTTCCCAGTTGGTAAAAGCGATGTTGAAAGAGCGGA TCCATGTAGATGGTGCTCGCGTATTGATCATGGGCCTGACTTTCAAGGAAAACTGCCCGGACCTGCGCAATACTCGTATCGTCGATATCGTGAGTGAACT GGCAGAGTACAACATTGCTGTGGATGTTTATGATCCATGGGTGAGTGCTGCCGAAGCGGAGCATGAGTATGGGATCACTCCTGTTTCCGAGCCGGGAGTA AATGCATACGACGGTATCGTTCTGGCGGTCGCTCACAATGAGTTCCGTGCCCTGGGTGCAGAAAATATCCGCCGGTTCGGTAAGGCGGAGCACGTTCTTT ATGATCTTAAATATCTTCTGAGTCGTGAAGAATCGGACATTCGCCTGTAAGCCCAGGTTTCTGAAGTCGTTAACCTAAATCAAATTACGAGCTAATATCG
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| DNA Sequence for Gene |
>MUM_RS0127340
ATGACCCGCTACGAAACTCTGATAGAAACACTTCCAGCTTCGCCGAAAACCTGGTTAGTCACCGGAGTTGCGGGTTTTATTGGCTCTAATTTGTTGGAAA CACTGCTTGGTTTGAATCAGACGGTTGTCGGGTTGGATAATTTCGCTACCGGTCACCAAAGAAACCTCGACGAAGTGAAAAATACAGTTCTCCCTGAGCA GTGGGCACGTTTTCGATTTGTCGAAGGTGACATTCGAGAGCTCAAGGATTGTCATCAGGCCTGCGAAGGTGTGGATTATGTACTGCATCAGGCCGCTTTG GGGTCTGTTCCTCGTTCCCTTAACGACCCGATCACAACAAACGGTACCAACATTGATGGCTACCTCAACATGTTGGTCGCGGCACGGGATGCCAAGGTAA AGAGCTTTACTTACGCGGCAAGCAGTTCGACTTATGGCGATCATCCCGGTCTGCCAAAAGTTGAAGATGTGATCGGTAAGCCGCTGTCCCCCTACGCGGT CACCAAGTACGTCAATGAACTGTATGCCGACGTTTTCGCCAGATGCTATGGTTTTGAAACAATCGGTTTGCGTTACTTCAATGTTTTTGGCAAGCGCCAG GATCCTGATGGTGCTTACGCGGCTGTTATCCCAAAATGGGCGGCCGCGATGATAAAGAACGAGGAAGTTTTCATCAATGGTGATGGTGAAACCAGTCGGG ATTTCTGCTTCATCGAGAATACAGTTCAAGCCAATATTTTAGCCGCGACTACAAGCGATTCTTCCGCGCGCAATCAGGTTTATAATGTGGCGGTCAGTGG GCGCACTGATCTCAATATGTTGTTTTCGGCGTTGCGCGAATCCTTGGCGGAAAACGGCATCACTTATGATAAAGAGCCTGTGTATCGAGACTTTCGCGCG GGTGATGTGCGCCATTCACAGGCAGATATTGGCAAAATACAAACGCTTTTGGGATATACACCCAAGTTTAATATTGGGCAAGGCATCGCAAAGGCTATGC CTTGGTATGCGGAATTCTTGAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAATAGCGCGAGATATGGATTTTCTCTATCTCGCTATATAGCTTACTAATAAGTACTCAGCTACGAGGCGCGGTTGAGTGATTAAGATTAGCGCAAGGAA GTTTTATGAGCGATAAGCCTATTTATGTAACTCAGCCCTACCTTCCGCCATTAGAAGAGTTTGTTCCCTATCTTGAAAAAATATGGGAGAGCAAGACACT GACCAATGGAGGCCCAATGCACCAGCAGCTTGAGAAGGAGCTCTGTGAGTACCTGGGGGTGGAGCACATTGCGCTTTTTAATAACGGTACAATCGCGTTA TTGACTGCGCTGCAGGCGCTCAGAGTTACAGGCGAAGTCATTACGACACCTTACTCATTCGTTGCGACTGCTCACTCTTTGTTGTGGAATGGGCTGCAGC CCGTTTTCGTGGATATCGATCCAGATACTTTCAATTTGGACGCGAAAAAGATTGAAGCTGCAATCAGCTCGAAAACTACAGCTATCATGCCGGTCCATTG
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| Amino Acid Sequence |
>wbpP
MTRYETLIETLPASPKTWLVTGVAGFIGSNLLETLLGLNQTVVGLDNFATGHQRNLDEVKNTVLPEQWARFRFVEGDIRELKDCHQACEGVDYVLHQAAL GSVPRSLNDPITTNGTNIDGYLNMLVAARDAKVKSFTYAASSSTYGDHPGLPKVEDVIGKPLSPYAVTKYVNELYADVFARCYGFETIGLRYFNVFGKRQ DPDGAYAAVIPKWAAAMIKNEEVFINGDGETSRDFCFIENTVQANILAATTSDSSARNQVYNVAVSGRTDLNMLFSALRESLAENGITYDKEPVYRDFRA GDVRHSQADIGKIQTLLGYTPKFNIGQGIAKAMPWYAEFLK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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