Pseudomonas sp. PAMC 25886, MUM_RS0123430
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004544, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGCCCGTGAAGAACAGGTCGACCCGCTGACCCTCAAGGGCTCCTATGCCGGGGCGATGGGTTTGCCGCAGTTCATGCCGAGCAGCTTTCGCGCGTACG CCGTGGACTTCGACGGTGACGGCCATATCAATATCTGGAGCAACCCCGATGACGCCATCGGCAGTGTTGCCAGCTACTTCAAGCGTCATGGTTGGGTAGC CGGCGAGCCGGTGGTGATCCGCGCCGAGGTGACGGGTGACCGCGCCGACGAAGGCCTGACCCAGGGTATCGAGCCGGCCAGGACGGTCGGGGAGTTGCGG GCGCTGGGGTGGTCGAGTCAGAATGCGCCACGCGATGATATGCCGGTGACGGCGTTCCGCCTCGAAGGCGAGAACGGCCCGGAATATTGGATGGGCCTGA AGAATTTCTACGCAATCACGCGTTATAACCGCAGTGTGATGTACGCCATGGCCGTGCATCAGCTGTCAGACATGCTGGTCCAAGCACGGGGCGTCAAGTA
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| DNA Sequence for Gene |
>MUM_RS0123430
ATGCCGGTATCACCGATGTACAAACCCCTGAAGCTGGTGGCATACGCCGCATTGTCGTTGTTGGTGGTCAGTTGCTCCACCAGTCGTGCACCGGTGCAAA AATCCGGTGGCACCGCCATCCGCTCCCAGCCGGGGCTGGACATCAACCGCGCCCACAAAGACGGCGCGCCGTGGTGGGATGTGGATGTTTCGAAAATCCC GGACGCCACGCCGACCCTGCACACCGGCCCTTACAAGGCCAACCCCTATACCGTGCTGGGCAAAAACTACTTCCCGCTGCAAGACTCCAAGACCTACGTG CAATCCGGCACGGCGTCCTGGTACGGGACCAAGTTCCATGGCCAGAACACCGCCAACGGCGAAGTGTATGACCTGTACGGCATGAGCGCGGCCCACAAGA CCCTGCCGCTGCCCAGCTACGTACGCGTGACCAACCTGGACAACAACCGCACGGTGATCCTGCGGGTCAATGACCGTGGGCCGTTCTATTCGGACCGGAT CATCGACTTGTCCTACGCCGCCGCGAAGAAACTCGGGTACGCCGAGATCGGCACGGCGCGGGTGAAGGTGGAAGGTATCGACCCGGCCCAGTACTGGGCC CAGCGTGGCAAGCCGGCGCCGTTGATGCTCAATGAGCCGCAGACCCCACAACCGCAAGTGACCGCATCCGCCGGCAAGATCGAGCAGTGGACACCGCCAC CGGCGCAGCACGCCCCCGACACTGTCGTGGTACCGCATGCCGCACCGGGGGCGTCCACCGTGGGCGGGCAGTACCTGCAAGTGGGCGCTTTCGCCAACCC GGACGCGGCAGAACTGTTAAGGTCCAAGCTCAGCGGGATGGTCAGCGCGCCGGTCTTCATCAGCTCTATTGTGCGTAACCAGCAGACCCTGCACCGTGTG CGCATGGGACCGATCGGTTCGCCGAGTGAAGTGGCGCAAGTACAGAACAGTGTGCGCATGGCCAACCTGGGGCAACCCAGCGTGGTCACCGCCGAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGACAAAGGATTGATGGTTCAGGCTCGCATGCGGGTTTGAGCTCTGGTTGTTGGCTCGTTGAACAATAAAAAACCCAGGGGCAAGGGGTGGGCGTAC AACCGAACACGCGACAGTCTGGCGACGGGCTGTCTGAATAGTTTTGCCCGCGAGGGCAAGTTTCCATAAGCAATTTCGAGAGACGGATGAACATCACCAC CTTAGCCAAACGCACGTGCCTGCTTCTTTCGCTGATCATCACCCCTGCCGCCTGGGCGGTGGAAATGGTGCCGGCTTCACCGCAACTGGCCGCCAAGGCC TGGGTGCTCATGGATGCCGCCAGCGGTAACGTGCTGGTGGAGAACAACGGTGACCAGCGCCTGCCCCCAGCCAGCCTCACCAAGCTGATGACTGCCTACA TCGCGACCCTGGAAATCCGTCGCGGCCAGATCGGTGAAAACGATCCGGTCACCGTCAGCGAAAACGCCTGGCGCACCGGCGGTTCGCGGATGTTCATCAA
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| Amino Acid Sequence |
>rare lipoprotein A
MPVSPMYKPLKLVAYAALSLLVVSCSTSRAPVQKSGGTAIRSQPGLDINRAHKDGAPWWDVDVSKIPDATPTLHTGPYKANPYTVLGKNYFPLQDSKTYV QSGTASWYGTKFHGQNTANGEVYDLYGMSAAHKTLPLPSYVRVTNLDNNRTVILRVNDRGPFYSDRIIDLSYAAAKKLGYAEIGTARVKVEGIDPAQYWA QRGKPAPLMLNEPQTPQPQVTASAGKIEQWTPPPAQHAPDTVVVPHAAPGASTVGGQYLQVGAFANPDAAELLRSKLSGMVSAPVFISSIVRNQQTLHRV RMGPIGSPSEVAQVQNSVRMANLGQPSVVTAE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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