Pseudomonas sp. PAMC 25886, MUM_RS0122670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004541, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCGCGCTGGTCAGCTCGCCGTTGGCTTGCAGGGTGCTAAGCAGCTGGCTTTGCGGGAACTGGCGCATCTTCAGCACATAGTCGAGCACCGGGCCGTCGCC GCCCACTTGCGGTGCTTCGGCACTGCCGGTGATTGGCAACACTTCCAGATACAAATCGTCGGTCAGACGCTGGTTGAGGCGAAGCTCTTCATTGCAGAAG TGGCCGCGGGCTTCCAGGGAGGTGAAATCGAGGAAGCCGAAATTGACCGGTTTCTTCATTTTATAGGCGTAGTCACCCGTGAGCAGAACCCAGGAAATAT GGGTTTCGATGACTTGGAACTTATCCACAGGATGGGGAAACAGGGCCGGGTTTTGTAGGGCTGCAATCAGGGACTGGCTCACGGGCGATCCTTCAGAGTC TGGGAAAATTCATGGCGGGCATTATGGCTCCTACAAGCGGTCGTGCAAACCGCTGTCCGGCTCATGTTGGTCATCAATAAAGTGCGTATAATCCGCCGCC
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| DNA Sequence for Gene |
>MUM_RS0122670
ATGACTCGTACCCGATCTCCCCGTTCCCGTAAAAAACCTCCTTCCCGCGGCCTGCGCCCATGGCTGGGCTGGGCGCTTAAGCTCAGTCTGGTAGGGCTTG TAGTGATCGCCGGCTTCGCGGTTTACCTCGATGCTGTGGTCCAGGAGAAGTTCTCTGGCAAGCGCTGGACCATTCCGGCCAAGGTCTATGCACGCCCGCT GGAGCTGTTCACCGGCCAGAAGCTGAGCAAGGATGACTTCCTCACCGAGCTCGATGCCCTGGGCTATCGCCGCGAGGCCGTGAGCAATGGCCCCGGCGCC GCAGCCGTTACCGGCAACACCGTCGACTTGAACACCCGCGGCTTCCAGTTCTATGAAGGCCTGGAAAAACCCCAGCCGGTCCGCGTGCGTTTCTCTGGCG ACTATGTGGCCGAACTGTCCTCGCTCAACGGCTCGAAACTGCCGGTGGTGCGCCTGGAGCCCTTATTGATCGGTGGGATTTATCCTAAAAACCTGGAAGA CCGCATTCTGATCAAGCTCGATCAAGTGCCGCCTTACCTGCTGGATACCCTGATCGCAGTGGAAGACCGGGACTACTACAGCCACTGGGGTGTATCGCCC AAATCCATCGCGCGTGCCATTTGGGTGAACACCTCTGGCGGCAAGATGACCCAGGGCGGCAGTACGCTGACGCAACAATTGGTCAAGAACTTCTACCTGA CCAACGAACGCAGCCTGACCCGTAAACTCACCGAAGCCATGATGGCGATGCTGCTGGAGTTGCATTACAGCAAGCAGGAAATTCTTGAGGCCTACCTCAA CGAAGTGTTCGTCGGCCAGGACGGTCAGCGTGCCGTGCACGGTTTCGGTCTGGCCAGCCAGTTCTTCTTCGGCCAGCCGTTGTCCGAGCTGAAGTTGCAT CAGGTAGCGTTGCTGGTGGGCATGGTCAAGGGGCCTTCCTACTACAATCCGCGCCGTAACCCGGAGCGTGCGCTGGAGCGGCGCAACCTGGTGCTCGACG TGCTTGAACAGCAAGGTGTCGCCACCCCTGAGCAAGTGGCTGCCGCGAAGAAAATGCCACTGGGTGTAACCACCCGTGGCAAGCTTGCCGACAGTTCCTT CCCCGGCTTTATCGACCTGGTCAAACGCCAGTTGCGTGACGACTACCGCGACGAAGATTTGACCGAAGAGGGCCTGCGAATCTTCACCAGTTTCGACCCG ATCCTGCAGATGAAAGCCGAAGCCTCGGTCAATGACACCTTCAAACGCCTGGCGGGCCGTAAAGGCGCTGATGACGTCGAGGCGGCGATGGTGGTGACCA ATCCGGAAACCGGTGAAGTCCAGGCCATGATCGGCAGCCGGCAGGCCAGCTTTGCCGGGTTCAACCGGGCGCTGGACGCGGTGCGGCCGATTGGCTCGCT GGTCAAGCCGGCGGTGTACCTGACCGCGCTGGAAAAACCGAGCAAGTACACCCTGACCAGTTGGCTGTCCGATGACCCATTGTCGGTCAAAGGTGCCGAT GGCCAGATGTGGACGCCGCATAACTTTGATCGTCGTTCCCACGGTACGATTTTCCTGTACCAGGGGTTGGCGCATTCCTACAACATTTCGACTTCCCGCC TCGGCCTTGAGCTGGGTGTGCCGAATGTCCTCAAGACGCTCGCCCGGTTGGGCATCACTCGCGAGTTCCCGGCGTTCCCGTCGATGCTGCTGGGCGCTGG CGCGATGAGCCCGATGGAAGTGGCCACCATGTACCAGACCCTGGCCAACGGTGGTTTCAATACACCGATGCGCGGGATCCGTAGCGTATTGACGGCTGAG GGCGAACCCCTCAAGCGTTATCCGTTCCAGATTCAGCAACGCTTTGACCCGGCCTCGATCTATCTGATCCAGAACGCCATGCAGCGCGTGATGCGTGAGG GTACCGGGCGCTCGGCCTACAACGTGCTGCCGGCCAACCTGACGCTGGCAGGCAAGAGCGGCACCAGTAACGATTCCCGCGACAGCTGGTTCGCCGGTTT CAGTCAGGACCTGCTGGCGGTGGTTTGGCTGGGGCGTGATGACAACGGCAAGACACCATTCACCGGTGCCACCGGCGCGTTGCAGGTATGGACCAGTTTC ATGAAGAAGGCCGATCCACTGCCGCTGAACATGCCGCAGCCGGACAATATCGTTCAGGCCTGGATTGATCCGCATACGGGGCAGGGCTCCGATGCCAACT GTCCGGGCGCGGTGCAGATGCCGTATATTCGCGGCAGCGAACCACCTCCCGGTGCAGCGTGCGGCGCCAGTGCGCCTGCCAGCGCTGAATCGGTGATGGA TTGGGTCAAGGGCTGGATGAATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAAGAGGGTTTCACGTGAACAAGTTGTTGATTCCAGCTATTACAGTTTTGGCTTTGCTCGGTGGTTGCGCCAGTGTGGAGCGGGGTTCTATCCCGGTG GTGGATTCCAGTACAACGGTGTCCAACAACGACCGGATCTCGGCCAACGGCGGCTTCCGTCAAACCGTCACCAACCGTCCAACTCAGGCCCGCGCTCAGG CGCAGGCCGTGCCTCAGGATTCGGGTGTAGTGGTAATGATCCCGGGCGGTGGTGCGGCCACCTCCGCACCGATCAGTACTCAGCCATGGACTCCAGGCCC AAGCACCTCGGGTCCGATCGACACCACGCCGGTTCAAGCGGCACCGATCAACCAGGGCACCTACAACATGCCGTCGACACCAAGCGGGATTCCGTCTGCC AGCAGCGCTGGTGGCTTGTCGGCCGATGAGCAGCTGGATGGCCCGGTGCTGGCCTTGCTGACTACCGCTCAGCAGCAGCAGTCTGGCGGCGACTTGAACG
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| Amino Acid Sequence |
>penicillin-binding protein 1B
MTRTRSPRSRKKPPSRGLRPWLGWALKLSLVGLVVIAGFAVYLDAVVQEKFSGKRWTIPAKVYARPLELFTGQKLSKDDFLTELDALGYRREAVSNGPGA AAVTGNTVDLNTRGFQFYEGLEKPQPVRVRFSGDYVAELSSLNGSKLPVVRLEPLLIGGIYPKNLEDRILIKLDQVPPYLLDTLIAVEDRDYYSHWGVSP KSIARAIWVNTSGGKMTQGGSTLTQQLVKNFYLTNERSLTRKLTEAMMAMLLELHYSKQEILEAYLNEVFVGQDGQRAVHGFGLASQFFFGQPLSELKLH QVALLVGMVKGPSYYNPRRNPERALERRNLVLDVLEQQGVATPEQVAAAKKMPLGVTTRGKLADSSFPGFIDLVKRQLRDDYRDEDLTEEGLRIFTSFDP ILQMKAEASVNDTFKRLAGRKGADDVEAAMVVTNPETGEVQAMIGSRQASFAGFNRALDAVRPIGSLVKPAVYLTALEKPSKYTLTSWLSDDPLSVKGAD GQMWTPHNFDRRSHGTIFLYQGLAHSYNISTSRLGLELGVPNVLKTLARLGITREFPAFPSMLLGAGAMSPMEVATMYQTLANGGFNTPMRGIRSVLTAE GEPLKRYPFQIQQRFDPASIYLIQNAMQRVMREGTGRSAYNVLPANLTLAGKSGTSNDSRDSWFAGFSQDLLAVVWLGRDDNGKTPFTGATGALQVWTSF MKKADPLPLNMPQPDNIVQAWIDPHTGQGSDANCPGAVQMPYIRGSEPPPGAACGASAPASAESVMDWVKGWMN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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