Pseudomonas sp. PAMC 25886, MUM_RS0119980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004533, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTGCACCAACCACAACCTGCCACGCCAACTGCAGGTAGGGGACATCAACCAGGCTTGCGAGCAGACACCCGAGTTTGTTTCGTTCCGCAACATCACGG CGGCAACCCCGAGTTTTGCGCCGCCCCTGGACAGCGACTTCCTGTGGCGACTGATCAGCAATATGTCGCTCAACTATTTGTCGCTGACCGATATCAACGC CCTGAGAGTGATCCTCGAAACCTACGACCTGCCGCGCTATCACGACCGCCAGGTGGAGAAGGTCAGCCAGAGAAGGCTTGGCGCACTTCAATCGATCAGC CATCAGCCTGTGGACCGGCTGCACCGGGGCCTGCCATTTCGCGGCTTGCGTGTTGACCTCACCATCGATCCCGAGGGCTACCTGGGGGAGGGCGACGTGT TTGTCTTTGCTTCGGTACTGAATGAGTTCTTCGCGCTCTACGCCAGCCTCAACTCGTACCACGAACTGCGAGTCATCAGCACACAAGGAGATGTGTACCT
|
|
| DNA Sequence for Gene |
>MUM_RS0119980
ATGGCCACCCCGGATGGGCCAGCAGCCCCTGCTTTAAACGCATTATCCCGAGTGATTCGCGAGTACTCGGTGTTTCAGGCGGTGGCGCAGATCATCGAGC GCTTGCGCGAGGCGCACCCCTCGCTGGACGAAGAGGGGTTGTACGACCAATTGGAGTTCCAGGCCAATCCAGGCTTTGGGTTTCCCGGCAACGATATTGA CCGTGTGGAGTTTTTTGTCGAGCACGGCCATTTGCGGGCACGGGTTCGTCTCAACGTGCTGGGCCTGTTTGGTACAGGGTCGCCGCTGCCGGCGTTCTAT GGCGAGCAAGCCTTTGCCGAGGTCTCGGGCGGCAATACGACGCGTGATTTCCTGGATCTCTTTCACCATCGCCTGCACCGGCTGATAGTGCCGATCTGGC GAAAATATCGTTATCAGGCGAGTTTTCAAACCGGCGCCAGTGATCCATTTTCCGAGCAGATGTTTGCGTTGGTGGGCCTGGGCGGCAGCGTGATTCGCAG CACCGCTCGACTGAACTGGAAGCGCCTGTTGCCCTACCTCGGGCTGCTGAGTCTGCGGGCGCACTCTGCCGCGCTGATCGAGACCGTGCTGCGTTATTAC TTCAAGCACAGCCGGCTGGTTATAGAGCAGTGGGTCAAGCGCACGGTAGTGATTGCCCACGAGCAGCGTAATGACCTTGGCCGCAGCTATAGCTCGCTGG GTTCCGATCTGGTGCTGGGGGATTCCATCCTCGATCGCAGTGGCATGTTCAGGGTTCATGTGCTGGCACTCGACTGGGAGCGTTTTCACGAGTTTTTGCC CACCGGGGCGGGTTATGAGCCGCTGTGTGCGCTGGTGCGTTTCGCCGCCCGGGACCCCTTGGAATACGACGTTCGGCTGGTGTTGGCAGAGGGTGAGGTA CGGCCATTGCGCATCGGTGAACACAACGTCTGCCGCTTGGGCTGGACCAGTTGGCTGGGGCATGAGCGGGCTTACGGCATGGTCACCCTGGCCAGTAAAT CTCATTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGACGGATGAATATGATGAATGTGGATCTGCAACAACTTATCCAGGCATTGACGGCGCCCACACGGCGCGATCTGGAACGCTGCGCCGAACGATGTGTGA CCCGCGGTGGCGGCGAGGTCTTGGTGGAAGACCTGCTGTTGACCCTCCTGGAGCATCCCGAGGGCCTGTTGATGCGTGCGCTGCAGGACGCGGGCGTGGA TGCCGGCGAACTGCACGCCGTGCTGCAACCAAGGATCGACCAGAGCGCCTCCCGAAATCCGGTGTTTTCACCTGCGTTGGTGCAATGGTTGCAGCAAGCG GTGCTGGTTGCCCGCCTGGAGTTGGGCCGAAGCGAAGTGGAGCACGGTGCCTTGTTGCTGGCGTTGTTGCGCAACCCGTTGCAGCACGCGGGCAGCCGAT ACCAGGTGGTGTTGAGCAAGCTTGATGTGCAGCGTGTGCTCGGTTTTGTCTTGAGTGAAAGCCCGCAGACACCTTCACCTGAAGGCGGGCATTCATTGCT
|
|
| Amino Acid Sequence |
>type VI secretion protein
MATPDGPAAPALNALSRVIREYSVFQAVAQIIERLREAHPSLDEEGLYDQLEFQANPGFGFPGNDIDRVEFFVEHGHLRARVRLNVLGLFGTGSPLPAFY GEQAFAEVSGGNTTRDFLDLFHHRLHRLIVPIWRKYRYQASFQTGASDPFSEQMFALVGLGGSVIRSTARLNWKRLLPYLGLLSLRAHSAALIETVLRYY FKHSRLVIEQWVKRTVVIAHEQRNDLGRSYSSLGSDLVLGDSILDRSGMFRVHVLALDWERFHEFLPTGAGYEPLCALVRFAARDPLEYDVRLVLAEGEV RPLRIGEHNVCRLGWTSWLGHERAYGMVTLASKSH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|