Pseudomonas sp. PAMC 25886, MUM_RS0114190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004520, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGGATTAATCCCTCGCCTCGCACAGCAGTTGTGCGAAATGGGGCAGAAGTGAACCGTTCTTCTACGCAGGTGCTTAGTTTGAATTAACCAACTATCAAA GTGCCACTTTATAAACAGGTTAAAAATTTATACATCTAACGCCCATAAAAAAATCCGCCGCAGAGACTGCGGCGGCAAACCAAAGGATTTTGTCGAAGCA GAGCGGCTAAGACACGACCAAAACTACAGCAGCACGCGCAGCGGTATAGTGAATTTTAATTAATCGAGTTTAACCATCCCTTCACTGGTCCTTTACCGCA AACCGGTTAAAAATCCCCCATCGCGCAAAGGCCAGCGCCGCCCGCCAGGGGGTGCCCGGCTAAAACTACAACACGCGAAACCCGGCTTGAATGCCCGTCT TAATATCGCCTGCCCAAAAGTTATATGCGCCATAAAAAATAAGGCCGTGCACCTGCGCACGCAACTATTAGCGATTAATCTATCCGGGGTAGCTATAACC
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| DNA Sequence for Gene |
>MUM_RS0114190
ATGGTTAAACAGTGGAGCCTATTAGCGCTGGTCATTTCCAGCAGCCTGAGCCAAGTGGCTTTGGCAGAATCAGTAACGGATCAGGCAGACGCCAAGGGTT TTGTCGATGGCAGCACTCTCACCGGCGTCGCGCGCAACTACTACTTGAACCGTAACCGGGAAGAAGGCCGCGCCGACCAGCGTGACTGGACACAAGGCGT CATGGCCAACTACATCTCCGGTTTCACCCAGGGCACTATCGGGTTCGGCGTCGACGCCTATGCCTACGGCGGGCTGAAACTCGACTCCCAGCGCAAATAC GCGAACACCGGCAACCTGCCGCTTGATCGCAACGGCGACCCTCAGGACACCTACGGCTCGCTGGGTGGTGCGTTGAAACTGCGGATCTCCAGGACGCAGC TCAAATACGGTGAAATGCAGCCCACTGCGCCGGTGTTTGCCGTCGGTGGTGTCGGGTTGCTCGACCAGACCGCCACAGGCTTTGACCTGACCAGCAACGA AATCGCCGGCCTGAACCTGGAAGCCGGTCACTTCACCGCGACCAACGGTGGCGATACCACCAACCATGAGCACGATATCTTTGCCACCTACGCCAACGTA GCGACCAAGAGTGCCAGTTTTGTCGGGGGCAAATACACCTTCACCCCGGACTTGAGCGCGACGGTGTACGCCGGCGAATTGCAGGACGTCTGGCGCCAGT ACTACACCAACCTCAATTACGTGATGCCCCTGAGCAATGGCCAGTCGGTGACCCTGGACGGCAACCTGTACCGCACCCTCGATACCGGGAGTGCCAATGC AGGCACGATCAACACCACGGCGTACTCGCTGGCGGCGGCCTATTCGTTCCTGCAGGCCCACACGCTGACGCTGTCGTTCCAGAAGATCGATGGCAATGAG CCGTTCGACTATATCGGCGCGGGTGACAACGGCGCCGCCGCGGCCGGCGACTCGATCCTGCTGGCCAACTCGGTGCAATGGTCTGACTTCAACGGCCCAG GCGAAGCCTCCTGGGCCCTGCGGTACGACTTGAACATGGCGCCATACGGTGTGCCGGGACTTAGCTTCATGAGCCGCTACATCAACGGCTCCGACATTGA CGGCAGCCACACCCCCGCCAACAGTGCCTATCTCGGCGCCTACGGCGACGGCGCCAAGGAGCACGAAACCGACGTAGAAGTTAAGTACGTGGTCCAGAGC GGGCCGGCGAAAAACCTCGCGTTCCGCCTGCGCCAGGCCTACCACACCGGCAGTTCCGAGTCGGGCAGTGGCGGCGACGTCAACGATACGCGCCTGATCG TCAATTACCCGTTCAGCATCCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCCTTCCCGGGACGTGCCGGCGACGTCGGTCGCTGGCACGGTGATCGGCTATTTGGGTTGGCAGTTCTGCTGGAGGCGTTAAACTGCGCGGCCTCACTC TGCAGCAAAACGAGACCTTCATGGCCAACCACGACCTCGCTTTCACCCCCGACCTCGATCCGGATTCCATCTCCTCCGACGTCATCGGCTTCAACGGCAT CCTCGTCTCCACGCAAATTCCCACCCGCGCCGACGGCAGCCTGGAACTGGGCGACATCACCCTGCAAAGCGAATGCACCCTGCAGGCCCTCAAGGTGGCC CTGGAACGTGCCGGCAGCTCGATTGACCGGGTCATGCACCTGACCATTTATCTGACCGACATGGCCGATCGCGCTGCTTTCAACGAAGTCTACAAACGCT ATTTCGCCAAGCCCTGGCCCGTGCGTGCAGCGGTTGGCGTGGCCGCCCTGGCGGTGGAAGGCATGCGGGTTGAAGTCACGGCGATGGCTGCCAAGGCCTG
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| Amino Acid Sequence |
>porin
MVKQWSLLALVISSSLSQVALAESVTDQADAKGFVDGSTLTGVARNYYLNRNREEGRADQRDWTQGVMANYISGFTQGTIGFGVDAYAYGGLKLDSQRKY ANTGNLPLDRNGDPQDTYGSLGGALKLRISRTQLKYGEMQPTAPVFAVGGVGLLDQTATGFDLTSNEIAGLNLEAGHFTATNGGDTTNHEHDIFATYANV ATKSASFVGGKYTFTPDLSATVYAGELQDVWRQYYTNLNYVMPLSNGQSVTLDGNLYRTLDTGSANAGTINTTAYSLAAAYSFLQAHTLTLSFQKIDGNE PFDYIGAGDNGAAAAGDSILLANSVQWSDFNGPGEASWALRYDLNMAPYGVPGLSFMSRYINGSDIDGSHTPANSAYLGAYGDGAKEHETDVEVKYVVQS GPAKNLAFRLRQAYHTGSSESGSGGDVNDTRLIVNYPFSIL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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