Pseudomonas sp. PAMC 25886, MUM_RS0113830
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004518, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAAGCTGGCGATTTTCGACGTCGACGGCGTACTGACGGATGGCCGCCTGTACTTCCTGGAAGACGGCAGCGAGTTCAAGACGTTCAACACCCTCGACG GCCAGGGCATCAAGATGCTGATGGCCGCGGGCGTGCAAACCGGCATCATCAGCGGTCGCAAGACCCCGGTTGTGGAACGCCGCGCACAAAACCTGGGGAT TCCTCACCTGTATCAGGGCCGCGAGGATAAACTGGTGGTTCTGGACGAGCTTCTTGGCCAACTCAACCTAAGCTATGAACAGGTCGCCTACCTTGGTGAC GATTTACCCGACCTGCCGGTGATTCGCCGGGTCGGCCTGGGCATGGCCGTGGCCAATGCGGCGGCGTTCGTTCGCGAACACGCCCATGGTGTGACCACCG CCCGCGGCGGCGAAGGCGCCGCCCGCGAGTTCTGCGAATTGATTCTGCGCGCCCAAGGCAGCCTTGAAGCGGCTCACGCCGCCTACCTATAGAGCGTTTT
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| DNA Sequence for Gene |
>MUM_RS0113830
ATGCTGAGTAAAAAGATTCGCAATTTTCTGATATTTGCCATCATCGCCGCCGTGTTTCTCGCGGTCGGCTACTGGAATATCAGCCCGGAGCGCTTCCTCG ACAAGCCTGTTGCGCAGGTCGACGAGAGCGCTATCGACTATTACGCCATCAACGCCCACAGCATCCAGTACCTGCCCGATGGCAAGGTTCAGTATGAAAT GACCTCCGACAAGGTCGAACACTTGAAGGCATCCGAGGTCACTTTGCTGACCAAGCCGGACATGAACCTGTATCGCGGCGCCGAATTCCCGTGGCACGTC ACCAGTGAGCGTGGCGAAGTCAACCCGGACGGCACCCAGGTGGAATTGATTGACTCGGTGCGTGTAGCCCGTACCGACGCCAAGGACCGCGACACCATTA TTACCAGCAGTCGCATGACCGTATTCCCACAGAAGCAATATGCGCAGACCGAGCAAGACGTTAGAATCGACGGCGCTGGCGGTGTATCGACTGGCAAGGG AATGAAAGCGTATTTGAAAGAAAGCAGGATACACCTGCTATCGAACGTAAGAGGACAGTATGAGGCTCGTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AACCCTCCCTATTTTGCTCGGCCTGGGCGCAGCACTGGGAAGCGTGAGCGCCTGGGCTCTGCCGAACGATAGCCAGCAACCGATCCACATTCAGGCCGAT GATGCGCAACTGGATGACAAGAAAGGTATTGCGACCTACACCGGCGACGTCATCATCACTCAAGGCTCGATGAAAGTGACGGGTAATACCGTGACACTGA CTCGCACCCCGGCAGGCGATATCGACGTGGTCACTTCGGTCGGCAACCTGGCGTATTTCGAACAGCTGCAAAAAGTGGGCGACCCGACGCCGGTCAAAGG CTACGGCAAGACGATCCAGTACCACGCGCAGCAAAATCGCATCGTGCTGATCGATCAGGCCAGGGTCATCAATGACGGCAACACCACTGACGGCGAAAAA ATCGTCTATGACACGGTGAAGCAGATTGCCCAGGCCGGTCGTGCCACCGGTACGAAGATCGGCACGCCGAAGCCGCGCATCGATATGGTTATCCAGCCGA
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| Amino Acid Sequence |
>lipopolysaccharide ABC transporter, permease protein LptC, putative
MLSKKIRNFLIFAIIAAVFLAVGYWNISPERFLDKPVAQVDESAIDYYAINAHSIQYLPDGKVQYEMTSDKVEHLKASEVTLLTKPDMNLYRGAEFPWHV TSERGEVNPDGTQVELIDSVRVARTDAKDRDTIITSSRMTVFPQKQYAQTEQDVRIDGAGGVSTGKGMKAYLKESRIHLLSNVRGQYEAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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