Pseudomonas sp. PAMC 25886, MUM_RS0112345 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004514, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGAAGATCAGCGCCAGGATCCCCAGCACACCGTCATGGTTGACCTGAACCCCATAACCGCCGGTAAACACCTCTTTAAGGGTGTAGAGCGGGCTGGTGCC GATATCGCCATAAACCACCCCCACCGCCGCCACCAGCATGCCGATCGGCTTTGCGTTGGACTGCTCGGCACCTGCTGCCTGACTACTTGCCTGACCCATC AACCACTCCTGCCCTTTGACCTGCGGTCTTTTATAAACAGCGCGCCTGCTGCGGGCGCCTATGCTGTCCACAGCATGCGCTGTTTTACTTCTCGTTACAG ACGATTTATTGACCGAGGAAATTCACTCAGGTGCAACGGCGCGAAGCATAGCGCAGCACTCGTCGTATTTCCCTGCATAAAGCTGGTCAAGAGCGATTCC CGTCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCGCTAAGCGCCCGTCCGCCGCCTTTCGTGCACGACTGGCGGCGTCATTCAATACCGAGGTTAGAC
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| DNA Sequence for Gene |
>MUM_RS0112345
|rimO
ATGTCCACCACCATCGCAAAAGCCAACCCCAAGGTAGGCTTTGTATCCCTGGGCTGCCCAAAGGCTCTGGTCGACTCCGAACGCATCCTTACGCAGCTGC GCATGGAAGGTTATGACGTCGTGTCCACCTACCAGGACGCGGACGTGGTGGTGGTCAACACCTGCGGCTTCATTGACTCCGCCAAGGCAGAGTCCCTGGA AGTGATCGGCGAGGCCATCAAGGAAAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTGGAAGAAGGCAACATCCGCAACGTGCACCCGAGCGTGCTG GCCGTGACCGGCCCGCAGCAGTACGAGCAGGTGGTCAACGCCGTGCACGACGTAGTGCCGCCGCGCCAGGACCACAACCCGCTGATCGACCTGGTGCCGC CGCAGGGCATCAAGCTGACGCCGCGCCACTACGCCTACCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCGATGCGCGG CAAGCTGGTGAGCCGCCCGGTGGGCGACGTCCTGGACGAGGCCCAGCGCCTGGTCAAATCCGGCGTCAAAGAGCTGCTGGTGATCTCCCAGGACACCAGC GCCTACGGCGTCGACGTCAAATACCGCACCGGTTTCTGGAACGGCGCGCCGGTGAAAACCCGCATGACCGAACTCTGCGAAGCCCTGAGCAGCCTCGGCG TCTGGGTGCGCCTGCACTACGTTTACCCGTACCCGCACGTTGACGAACTGATCCCGCTGATGGCCGCCGGCAAGATCCTGCCGTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAATCCTCAAGGCCATGAAACGCCCGGCCTTCGAAGACAAGACCCTGGCGCGCATCAAGAACTGGCGCGAGATCTGCCCGGAA CTGATCATCCGCTCCACCTTCATCGTCGGCTTCCCGGGCGAGACCGAAGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAGGCCCAGCTGGACCGCG TTGGCTGCTTCCAGTACTCGCCGGTTGAAGGCGCGCCGGCCAACCTGCTGGACGCTGCGATCATTCCGGACGACGTCAAGCAGGACCGTTGGGAGCGTTT CATGGCGCACCAACAGGCCATCAGCTCGGCGCGCCTGCAACTGCGCATCGGCCGGGAAATCGAAGTACTGATCGACGAAGTCGACGAGCAAGGCGCGGTA GGCCGCTGCTTCTTCGACGCGCCGGAAATCGACGGTAACGTGTTCATCGACGATGCCAGCGGTCTGAAGCCAGGCGACAAGGTCTGGTGCACCGTGACCG ACGCCGACGAGTACGACCTGTGGGCTGAAAAACGCGCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTGTAAAGAATTGAAAAAGCCCTGCTTCTGGACAAGATGCGGGGCTTTTTTAGGTCTATCGTTTTGCCCATCAGCGCCAATCATCGGCAAGGGGCAGCG GGCATGCGTCAGCATTCGGTTATCCATACACCCAAATCCAGCGACTATCAGGAACTGACCCGTATTTGGGAGGCATCGGTGCGGGCCACCCATGATTTCC TGCCGGACAGTTACATCGAGTTGCTGAAAAACCTGGTGCTGACCCGCTACCTCGACGCGGTGATGCTGATCTGCACCAAGGACTCACGCCAGCGCATCAC CGGGTTTGCCGGAGTGGCGGCGGGCAAGGTCGAGATGCTGTTTATCGACCCCGCGCACCGTGGCCAGGGCCTGGGACGGCAATTGTTGCGCTATGCCATC GAGTGCATGAACGCCGACCAGTTGGACGTCAATGAGCAGAACCCGCAGGCCCTGGGCTTCTACTTCAAGCAGGGCTTCGAGGTGATCGGACGCACCGAGC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTTIAKANPKVGFVSLGCPKALVDSERILTQLRMEGYDVVSTYQDADVVVVNTCGFIDSAKAESLEVIGEAIKENGKVIVTGCMGVEEGNIRNVHPSVL AVTGPQQYEQVVNAVHDVVPPRQDHNPLIDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLDEAQRLVKSGVKELLVISQDTS AYGVDVKYRTGFWNGAPVKTRMTELCEALSSLGVWVRLHYVYPYPHVDELIPLMAAGKILPYLDIPFQHASPKILKAMKRPAFEDKTLARIKNWREICPE LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAAIIPDDVKQDRWERFMAHQQAISSARLQLRIGREIEVLIDEVDEQGAV GRCFFDAPEIDGNVFIDDASGLKPGDKVWCTVTDADEYDLWAEKRA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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