Pseudomonas sp. PAMC 25886, MUM_RS0112135
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. PAMC 25886 ctg7180000004512, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCGCGCCAGGCGCAGGTGCCGATCATCATGCTTACCGCCAGTTCCGACGAAGCCGACCGCGTGATCGGCCTGGAACTGGGCGCCGACGATTACATCGGC AAACCCTTCAGCCCCCGTGAGTTGCAGGCGCGGGTCAAGGCCTTGTTGCGTCGCGCCCAGTTTGGCCAGGAGCGCAGCGGTGGCGAGGTGCTGGTGTTTG GCGAGTGGCGCCTGGACATGGTCAGCCACCGGCTGTTCCACGTAGACGGCGAGGAAGTGATTCTTTCCGGCGCCGACTTTGCCCTGTTGAAACTGTTCCT TGACCACCCTCAGCAAATTCTCGACCGCGACACCATCGGCAACGCCACCCGTGGCCGTGACCTGATGCCTCTTGACCGGATTGTCGACATGGCCGTCAGC CGCTTGCGCCAACGCCTGCGCGACACCGAAAAACCACCCCGGCTGATCCGCACCGTGCGTGGCAGTGGCTATCAATTGGCAGCCAGCGTGGTTGCCGGCA
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| DNA Sequence for Gene |
>MUM_RS0112135
ATGCCCACTGAGCGCCTGCGTGAGCTGCGCCGGCGGATCCCGGTACCGCGCTCGCTGCTGGGGCGGATGTTACTGCTGACCCTGTTGGCGGTGCTGTTTG CCCAGGCGTTATCCAGCGTGATCTGGGTGTCGCAACTGCGCGCTACCCAGCTCGAAGGCCTGGTGACGGCAGCCCGTAGCCTGGCGCATTCGATGACCGC CAGCGTCAGTTATTTCCGTTCCTTGCCGGTGGCTTTTCGGCCCTTGGTGCTGGACCAATTGCGCAGCATGGGCGGTACGCGTTTTGTCGTCACCCTCAAC GACAAGCCGCTGGACATGGCGGTGTTGCCGCAAACCCCGCGTAAGCAAGCGGTGCTCGGCGCCGTAGAGGAAGTGTTGCGCCAGACCCTGGGCAGCGACG TGCATGTCTCGGTGGAGTTTGTCAGCGCCGAAGACCTGCGTATTTTCAATGCCGGCTTGAAGCTCGATGAGCTGCCGCGTTCCTGGGCGCACTACGCACT GACCCTGGAACCGGTGAATCCGCCGGTATTGGTGACCCAGATCCAACTGGCCCAGGGCGAATGGCTGTACATCGCGTCGTTGCTGCCGGAGCCTTACACC AGTCTTGAGGAACAAGGCCTGCCGTACCAGCAGGTGTGGTTTATCGTGCTCACGAGCGGTTTCCTGCTGCTGTTTATCGGCCTGTTGGTGCACTGGCAAA GCCGGCCGCTCAAGCGCCTGGCAAGGGCCGCGCGGGACATGTCCCTGGGTGCCGACGTGGAGCCGGTGGCCGAAGGTGGTGGCAGCGAAGTGGTGGAAGT GGGGCGCGCCTTCAACGCCATGCGCGAACGCATCAGCCGCTACCTGACCGAACGCAGCCAGTTGTTCAGCGCGATTTCCCACGACCTGCGCACCCCCATC ACGCGCCTGCGGTTGCGGGTGGAGTTGCTGGAAGACGAGAACCTGCAAACCAAATTCGGTCGCGACCTGGACGAGCTGGAGTTGCTGGTCAAAGGCGCGC TGCAGTGCGTCAAAGACACCGACATCCACGAAAACATCGAACCGGTAGACCTCAACCACGTGCTCGACTGCCTGGTGGAGCCTTACCTGGCGCCCAACGG CAATGGCCGCGTGACCCAGCATGGCCGGGCACTGACCACTTACCCGGGCAAGCCGCTGGCGCTCAAGCGCTGCATCGGCAACCTGATCGACAACGCGTTG AAGTACGGGCAGAACGCCCATTTGCACATTGAAGACGATGGCGCGGAGTTCATCCTTCACGTCGACGACGAAGGCCCGGGCGTGCCGGAACAGCGCCTGG AGCAAGTCTTCGAACCGCACTTCCGCCTGTCCGGGCAGCAGCAGGGGTATGGGTTGGGGTTGGGCATCGCCCGCAACATTGCCCACAGCCACGGGGGAGA AGTGAGTTTGCAGAATCTGCGTGAGGGTGGATTGCGGGTGACCTTGCAGTTGCCCCGCAGCCTGGATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGCCACCAATAACGGAACTGATTGATTACTTGTGGCGAGGGAGCTTGCTCCCGTTGGGGCGCGAAGCGGCCCCAAAAGATGGGACTGCTGCGCAGTCCA ACGGGAGCAAGCTCCCTCGCCACATTAGTCGTGCTGGGCGTTATAACGGCGGTTAAAGGCTCTGGCGCAACCTGGCCAGATCCCGCAACGGTGGCGCACC AAACAGCCGGCTGTATTCGCGGCTGAATTGCGAGGCGCTTTCATAGCCCACCCGATAGCCCGCCGCCGAGGCTTCCAGGCCCTCGGCGATCATCAACCGC CGGGCTTCCTGCAAGCGCAACTGCTTCTGATACTGCAACGGGCTCATGGCGGTCATTGCCTTGAAGCGGTGGTGCAAGGTCGAGACGCTGAGGTTCACTT CCTTGGCCAGGTCATCAATGCGAAGAGGCTGTTCGTAGTTGCCGTTCAACCAACTGATCGCCTGGCTGACCCGATGGCTCTGACTGTTGGCCACGGCGAT
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| Amino Acid Sequence |
>sensor histidine kinase
MPTERLRELRRRIPVPRSLLGRMLLLTLLAVLFAQALSSVIWVSQLRATQLEGLVTAARSLAHSMTASVSYFRSLPVAFRPLVLDQLRSMGGTRFVVTLN DKPLDMAVLPQTPRKQAVLGAVEEVLRQTLGSDVHVSVEFVSAEDLRIFNAGLKLDELPRSWAHYALTLEPVNPPVLVTQIQLAQGEWLYIASLLPEPYT SLEEQGLPYQQVWFIVLTSGFLLLFIGLLVHWQSRPLKRLARAARDMSLGADVEPVAEGGGSEVVEVGRAFNAMRERISRYLTERSQLFSAISHDLRTPI TRLRLRVELLEDENLQTKFGRDLDELELLVKGALQCVKDTDIHENIEPVDLNHVLDCLVEPYLAPNGNGRVTQHGRALTTYPGKPLALKRCIGNLIDNAL KYGQNAHLHIEDDGAEFILHVDDEGPGVPEQRLEQVFEPHFRLSGQQQGYGLGLGIARNIAHSHGGEVSLQNLREGGLRVTLQLPRSLD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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